| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5263 |
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| Symbol | |
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| ID | 1042305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 6009176 |
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| End bp | 6010843 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637148662 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_747364 |
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| Protein GI | 26991939 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCCACGC CTGTCGAACC TCTGCGTTTG CTGCTGTTGG CCGATGAGCC GGAATGGGCT
GCCTCGTTGC ACGCGTGCAT GCCTGCACTG GGTGGCAGCG CCGTGCTATT GACTGCGCCA
AACTGGGAGG CGGTCGACAG CCTGTTCAGC CATGATCGTC AGGCCGTCGT GCTGGCAACA
CCCGCCTTGC AGCCCGCCCC CGGGCGTTGC GAGCTGCCGA CTATTCTGCT GCTTGAACAC
GAGCCTGAGG CAGCGCCCAG CGCTGTCAGT GACTGGCTGG TGCGCGACCA GCTCAACGCC
GATACCCTGC GCCGCTCACT GCGCCATGTG CGAGAGCGAG GGGTGCTGGT CGCCACCTTG
CAGCGCCTTG CCGAGCAGGA CCCGCTGACC GGCATCGCCA ACCGCCAGGG CTTCCAGGCT
TTGCTCAATG CACGCCTGGC CGAAAACGAA GGCCGTGGTG TCGCGCTTGG CCACCTGGAC
CTGGACAACT TCCGCCACGT CAACGACGCC CTGGGCCACC AGAGCGGTGA CCGGTTGATC
CTGCAGGTGG TGGCACGGCT GAAGCATCAG CTGGAGGCGG GCGACCAGCT GGCACGTCTG
GGTAGCGACG AGTTCGCCCT GCTGATCGAC ACCCGTCGCG ATGCCAATCG CGCCGAATGG
ATTGCCGAGC GCATCGTCGA GGCCTTGGCA GAGCCCTACT GGATCGACGG CGAAAGCCTG
CTGCTGGGCT GCAGCCTGGG CATTGCACAT GCTCGCGCGC AGAGCGGCGC CGATCCGCTG
ATGTGGCACG CGCACATCGC CATGCGTCAG GCCAAGGGCA GCCAAGGCTG CACCTTCCAT
GTGTTCAACG AACGCATCAA CCGCAACGCC CGCAGCCTTG CTGACCTGGA AAGCGAGTTG
CGCCGCGCCC TGCGCCGCGA CGAACTGGAG CTGCACTATC AGCCCCGCCT GAACCTGGCT
GACGGGCGCA TTGTTGGCCT GGAGGCGCTG GTGCGCTGGC GCCATGCCGA GCGCGGGCTG
TTGCCACCCA GTGAGTTCGT GCCACTGGCC GAGCAGAGCG GCCTGATCGT GCCCTTGGGT
TATTGGGTTA TTTCCCGTGC CCTGCGTGAC ATGCAGGCAT TGTGCGAGCG CGGCCTGGAA
CCGTTGCACA TGGCGGTCAA CCTGAGTTTT CGCCAATTCC AGGACAGCCA GCTACTGGCC
ACGTTGAGTC GCCTGATCCT CGAGCACGGT GTGGATGCCC GCTGGCTTGA GTTCGAGCTG
ACCGAGACGG CGGTGATGCG CCGCAACGAG GTGGTGCGCC AGACCATGGA CGCGCTGGGT
CGCCTGGGCG TGCGCTTCTC GCTCGATGAT TTCGGCACCG GGTTTTCTTC GTTCGTGCAC
CTAAACAGCC TGCCGATCAC CTTGCTCAAG GTGGACCGCA GCTTTGTTGC GGAAATGGAA
ATGCGCGAAG AGAACCGCAA GCTGGTACAC GCCATGATCA ACCTGGCGCA CAACCTCAAC
CTCGAGGTGG TGGCCGAGGG TGTGGAGAGT GAAGAGCAGC TGACGTTGTT GCGCGGGTTT
GGCTGCGACC AGGTGCAAGG CTTCCTGGTC AGCAGACCGC TACCGATAGG GGAATTGATG
GCGTATTTGC TGCAGGCGCC TGGCCGCCAG TTGGAGGGTG TCCTTTAG
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| Protein sequence | MSTPVEPLRL LLLADEPEWA ASLHACMPAL GGSAVLLTAP NWEAVDSLFS HDRQAVVLAT
PALQPAPGRC ELPTILLLEH EPEAAPSAVS DWLVRDQLNA DTLRRSLRHV RERGVLVATL
QRLAEQDPLT GIANRQGFQA LLNARLAENE GRGVALGHLD LDNFRHVNDA LGHQSGDRLI
LQVVARLKHQ LEAGDQLARL GSDEFALLID TRRDANRAEW IAERIVEALA EPYWIDGESL
LLGCSLGIAH ARAQSGADPL MWHAHIAMRQ AKGSQGCTFH VFNERINRNA RSLADLESEL
RRALRRDELE LHYQPRLNLA DGRIVGLEAL VRWRHAERGL LPPSEFVPLA EQSGLIVPLG
YWVISRALRD MQALCERGLE PLHMAVNLSF RQFQDSQLLA TLSRLILEHG VDARWLEFEL
TETAVMRRNE VVRQTMDALG RLGVRFSLDD FGTGFSSFVH LNSLPITLLK VDRSFVAEME
MREENRKLVH AMINLAHNLN LEVVAEGVES EEQLTLLRGF GCDQVQGFLV SRPLPIGELM
AYLLQAPGRQ LEGVL
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