| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5228 |
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| Symbol | dapF |
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| ID | 1042378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 5962315 |
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| End bp | 5963178 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637148627 |
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| Product | diaminopimelate epimerase |
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| Protein accession | NP_747329 |
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| Protein GI | 26991904 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTGGCGA AAGCCTGCTG CCGGAGTAAG CCCATGCTGC TGCGTTTTAC CAAGATGCAT
GGGCTGGGCA ACGACTTCAT GGTCCTGGAC CTGGTCAGCC AGCACGCGCA CATCCAGCCC
AAGCACGCCA AGCAATGGGG TGACCGCCAT ACCGGTGTCG GCTTCGACCA GTTGCTGATC
GTCGAGGCGC CGAACAACCC GGAAGTGGAC TTCCGCTACC GCATCTTCAA CGCCGACGGC
TCCGAGGTCG AGCAATGCGG CAACGGTGCG CGCTGCTTTG CCCGCTTCGT GCTGGACAAG
CGCCTGACCG CGAAAAAGCG CATCCGCGTG GAAACCAAGA GCGGCATCAT CGTGCTGGAC
GTGCAGAACG ACGGCCAGGT GAGTGTCGAC ATGGGCCCAC CCCGCTTCAT CCCTGCCGAA
ATCCCCTTCG TTGCTGACGC GCAGGCGCTG AACTATCCAC TGGAGGTCGA CGGCCAGCTG
CATTCCATAG CCGCCGTGTC CATGGGTAAC CCGCACGCCG TGCTGCGTGT CGACGACGTG
CAGACTGCCC CCGTGCACGA GCTGGGCCCG AAGATCGAAA ACCACCCACG CTTCCCACAG
CGGGTGAATG CCGGCTTCAT TCAAGTCATC GACCGCCACC GCGCCAACCT GCGCGTGTGG
GAACGCGGCG CCGGCGAAAC CCAGGCTTGC GGCACCGGCG CCTGCGCCGC GGCCGTGGCG
GCGATCAGCC AGGGCTGGAT GGACTCCCCG GTGTCCCTCG ACCTGCCCGG TGGCCGCCTG
CACATCGAAT GGGCCGGCCC CGGCAAGCCC GTGATGATGA CCGGCCCGGC CGTACGCGTC
TACGAAGGAC AGGTTCGTCT CTAA
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| Protein sequence | MLAKACCRSK PMLLRFTKMH GLGNDFMVLD LVSQHAHIQP KHAKQWGDRH TGVGFDQLLI
VEAPNNPEVD FRYRIFNADG SEVEQCGNGA RCFARFVLDK RLTAKKRIRV ETKSGIIVLD
VQNDGQVSVD MGPPRFIPAE IPFVADAQAL NYPLEVDGQL HSIAAVSMGN PHAVLRVDDV
QTAPVHELGP KIENHPRFPQ RVNAGFIQVI DRHRANLRVW ERGAGETQAC GTGACAAAVA
AISQGWMDSP VSLDLPGGRL HIEWAGPGKP VMMTGPAVRV YEGQVRL
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