Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_5214 |
Symbol | rho |
ID | 1042415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 5947205 |
End bp | 5948464 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637148613 |
Product | transcription termination factor Rho |
Protein accession | NP_747315 |
Protein GI | 26991890 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00426874 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTGA CTGAACTCAA GCAAAAGCCG ATTACCGATC TTTTGGAAAT GGCCGAACAG ATGGGCATCG AAAACATGGC CCGTTCGCGC AAACAGGACG TGATTTTCGC CCTGCTGAAG AAGCATGCGA AAAGCGGCGA AGAGATCTCG GGTGACGGCG TGCTGGAGAT TCTCCAGGAT GGTTTCGGTT TCCTGCGTTC GGCTGATGCG TCCTACCTGG CCGGCCCAGA CGATATCTAT GTCTCGCCCA GCCAGATCCG CCGTTTCAAC CTGCGTACCG GCGACACCAT CGTCGGCAAG ATCCGCCCAC CGAAGGAAGG GGAGCGTTAC TTCGCCCTGC TGAAGGTCGA TACCATCAAC TTCGACCGCC CGGAAAACGC GAAGAACAAG ATCCTGTTCG AAAACCTGAC GCCGCTGTTC CCGAACAAGC GCCTGAAGAT GGAGGCCGGT AACGGCTCCA CCGAGGACTT GACCGGTCGC GTCATCGACC TGTGCGCCCC GATCGGCAAA GGCCAGCGCG GCCTGATCGT TGCCCCGCCG AAAGCCGGTA AGACGATCAT GCTGCAGAAC ATTGCGGCCA ACATCACCCG TAACAACCCT GAGTGCCACC TGATCGTCCT GCTGATCGAC GAGCGCCCGG AAGAAGTGAC CGAAATGCAG CGCACCGTGC GTGGCGAAGT GGTTGCTTCC ACCTTCGACG AGCCGCCAAC CCGCCACGTG CAGGTTGCCG AGATGGTGAT CGAGAAGGCC AAGCGCCTGG TCGAGCACAA GAAAGATGTG GTTATCCTGC TGGACTCGAT CACTCGACTG GCGCGTGCCT ACAACACCGT GATCCCGAGC TCCGGCAAGG TGCTGACCGG TGGTGTCGAC GCCCACGCCC TCGAGAAGCC CAAGCGCTTC TTCGGTGCTG CGCGTAACAT CGAGGAAGGC GGTTCGCTGA CCATTATCGC CACTGCGCTG GTTGAAACCG GCTCGAAGAT GGACGAAGTG ATCTACGAAG AGTTCAAGGG TACCGGCAAC ATGGAGCTGC CGCTGGACCG CCGCATCGCT GAGAAGCGTG TGTTCCCGGC CATCAACATC AACCGCTCCG GCACTCGCCG CGAAGAGTTG CTGACCGCTG ACGACGAGCT GCAGCGTATG TGGATTCTGC GCAAGCTGCT GCACCCGATG GACGAAATCG CTGCCATCGA GTTCCTGGTC GACAAGCTCA AGCAGACCAA GACCAACGAT GAGTTCTTCC TGTCGATGAA GCGCAAGTAA
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Protein sequence | MNLTELKQKP ITDLLEMAEQ MGIENMARSR KQDVIFALLK KHAKSGEEIS GDGVLEILQD GFGFLRSADA SYLAGPDDIY VSPSQIRRFN LRTGDTIVGK IRPPKEGERY FALLKVDTIN FDRPENAKNK ILFENLTPLF PNKRLKMEAG NGSTEDLTGR VIDLCAPIGK GQRGLIVAPP KAGKTIMLQN IAANITRNNP ECHLIVLLID ERPEEVTEMQ RTVRGEVVAS TFDEPPTRHV QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKVLTGGVD AHALEKPKRF FGAARNIEEG GSLTIIATAL VETGSKMDEV IYEEFKGTGN MELPLDRRIA EKRVFPAINI NRSGTRREEL LTADDELQRM WILRKLLHPM DEIAAIEFLV DKLKQTKTND EFFLSMKRK
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