Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4922 |
Symbol | thiC |
ID | 1041616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 5594193 |
End bp | 5596073 |
Gene Length | 1881 bp |
Protein Length | 626 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637148323 |
Product | thiamine biosynthesis protein ThiC |
Protein accession | NP_747025 |
Protein GI | 26991600 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAAAC AAGAAAAAGC GATCAACCTC AGCGAATCGG CACAAGTCGA TCAGCAGTCC GTGCAACCGT TCCCGCGTTC GCGCAAGGTG TATGTCGAAG GCTCGCGCCC GGACATCCGT GTCCCCATGC GTGAAATCAG CCTGGATGAC ACCCCGACCG ATTTCGGCGG CGAGTCCAAC GCCCCGGTGC TGGTGTATGA CACGTCTGGC CCGTACACCG ACCCCGACGT GATCATCGAC GTGCGCAAAG GCCTGCCCGA TGTGCGTTCG GCGTGGATCG AAGCCCGCGG TGACACCGAG CGCCTGGAAG GCCTGAGCTC CGACTTCGGT CAGCAGCGCC TGAACGATGC AGAGCTGGCC AAGCTGCGTT TTGCCCATGT GCGCAACCCG CGCCGGGCCA AGGCCGGCGC CAACGTCTCG CAGATGCACT ATGCCCGTCA GGGCATCATC ACCGCCGAAA TGGAATACGT GGCCATCCGC GAAAACATGA AGCTACAGGA GGCCCGCGCT GCCGGCCTGC TGAATGAGCA ACATGCCGGC CACAGCTTCG GTGCCAACAT CCCGAAAGAA ATCACCCCTG AATTCGTCCG CCAGGAAATC GCCCGTGGCC GCGCGATCAT TCCGGCCAAC ATCAACCACC CGGAAGTAGA GCCGATGATC ATCGGCCGCA ACTTCCTAGT GAAGATCAAC GGCAACATCG GCAACAGCGC CCTGGGTTCC TCGATCGAGG AAGAGGTGGC CAAGCTGACC TGGGGCATCC GCTGGGGCTC GGACACGGTC ATGGACCTGT CCACCGGCAA GCACATCCAC GAAACCCGCG AGTGGATCAT TCGCAACTCG CCGGTGCCGA TCGGTACCGT GCCGATCTAC CAGGCCCTGG AAAAGGTCAA CGGCGTGGCA GAGGACCTGA CCTGGGAACT GTTCCGCGAC ACCCTGATCG AGCAGGCCGA ACAGGGCGTG GACTACTTCA CCATTCACGC CGGTGTGTTG CTGCGCTATG TGCCCCTGAC CGCCAAGCGG GTCACCGGCA TCGTCAGCCG CGGTGGCTCG ATCATGGCCA AGTGGTGCCT GGCGCACCAC AAGGAAAACT TCCTGTACAC CCACTTCGAC GAAATCTGCG AAATCATGAA GGCCTACGAC GTCAGCTTCT CGCTGGGCGA CGGCCTGCGC CCTGGCTCGA TTGCCGACGC CAACGACGCC GCGCAATTCG GTGAGCTGGA AACCCTCGGC GAGCTGACCA AGATTGCCTG GAAGCACGAC GTGCAATGCA TGATCGAAGG CCCCGGCCAC GTGCCGATGC AATTGATCAA AGAGAACATG GACAAGCAGC TGGAGTGCTG CGACGAGGCG CCGTTCTACA CCCTCGGCCC ACTGACCACC GACATCGCGC CGGGTTACGA CCACATCACC TCGGGCATTG GTGCGGCAAT GATCGGCTGG TTCGGTTGCG CCATGCTCTG CTACGTCACG CCGAAGGAGC ACCTGGGCCT GCCGAACAAG GACGACGTCA AGACCGGCAT CATCACCTAC AAGATCGCCG CGCATGCCGC CGACCTTGCC AAGGGCCACC CGGGTGCACA GATTCGCGAC AATGCCCTGT CCAAGGCGCG TTTCGAGTTC CGTTGGGAAG ACCAGTTCAA CCTGGGCCTC GACCCGGACA CCGCCCGTGC TTTCCACGAC GAGACCCTGC CGAAGGAATC GGCCAAGGTC GCGCACTTCT GCTCAATGTG CGGGCCGAAG TTCTGCTCGA TGAAGATCAC CCAGGAAGTG CGTGAGTACG CTGCCAAGAT CGAGGCCGTG GATGTGACGG TCGAGCAAGG CATGCGTGAG CAGGCCGAGC GGTTCCGCCA GGAAGGCAGC CAGCTGTACC ACAAAGTCTA A
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Protein sequence | MTKQEKAINL SESAQVDQQS VQPFPRSRKV YVEGSRPDIR VPMREISLDD TPTDFGGESN APVLVYDTSG PYTDPDVIID VRKGLPDVRS AWIEARGDTE RLEGLSSDFG QQRLNDAELA KLRFAHVRNP RRAKAGANVS QMHYARQGII TAEMEYVAIR ENMKLQEARA AGLLNEQHAG HSFGANIPKE ITPEFVRQEI ARGRAIIPAN INHPEVEPMI IGRNFLVKIN GNIGNSALGS SIEEEVAKLT WGIRWGSDTV MDLSTGKHIH ETREWIIRNS PVPIGTVPIY QALEKVNGVA EDLTWELFRD TLIEQAEQGV DYFTIHAGVL LRYVPLTAKR VTGIVSRGGS IMAKWCLAHH KENFLYTHFD EICEIMKAYD VSFSLGDGLR PGSIADANDA AQFGELETLG ELTKIAWKHD VQCMIEGPGH VPMQLIKENM DKQLECCDEA PFYTLGPLTT DIAPGYDHIT SGIGAAMIGW FGCAMLCYVT PKEHLGLPNK DDVKTGIITY KIAAHAADLA KGHPGAQIRD NALSKARFEF RWEDQFNLGL DPDTARAFHD ETLPKESAKV AHFCSMCGPK FCSMKITQEV REYAAKIEAV DVTVEQGMRE QAERFRQEGS QLYHKV
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