Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4886 |
Symbol | |
ID | 1044456 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 5554347 |
End bp | 5554892 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637148287 |
Product | hypothetical protein |
Protein accession | NP_746989 |
Protein GI | 26991564 |
COG category | [S] Function unknown |
COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.793717 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGATGT CTGAACATCG TCGTTATCAG CCGAACCTTT ACCAGGGAGA GGTAAGCATG GCTTTCGATG CTTATGTTCA TATCGCGGAA ATCACTGGCG AAGCACTGGA TAAGCAGTAC GCCAACTGGA TCGAAATCAT CGGCTACAAG TTCGGTGCCA ACCAGAGCAC CTCTGCCACC GCAAGCTCCG CGGGCGGCGC ATCATCAGGC CGCACCACAC TCACCAACTT CACCTTCACT AAGTACCTGG ACAGTGCCAG CTGCAAGCTG CTGGAGGCGA GCTGTGCCGG GCAGCACCTG AAGGAAGTGA AGCTCGTGCT GTGTCGTGCG GGTGGCGACA AGCTCAAGTA CTACGAAGTC GTCCTGGAAG AAGTGATCAT TGCCGATTAC GCCCAAAGCG CCAGCGCTGG GGTGCCAGTG GAAGTCGTGC AGCTGAACTA CGGGCGCATC AAGACAATCT ACACGCGGCA GAAACGCCTC GACGGCAGCG CTGGCGGCAA CGTCACGGGC GGATGGGACC GCATCAACAA CAAGAAGTAT GCGTGA
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Protein sequence | MTMSEHRRYQ PNLYQGEVSM AFDAYVHIAE ITGEALDKQY ANWIEIIGYK FGANQSTSAT ASSAGGASSG RTTLTNFTFT KYLDSASCKL LEASCAGQHL KEVKLVLCRA GGDKLKYYEV VLEEVIIADY AQSASAGVPV EVVQLNYGRI KTIYTRQKRL DGSAGGNVTG GWDRINNKKY A
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