Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4782 |
Symbol | thiD |
ID | 1041826 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 5445043 |
End bp | 5445840 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637148183 |
Product | phosphomethylpyrimidine kinase |
Protein accession | NP_746887 |
Protein GI | 26991462 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase |
TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.291324 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0384059 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATACCT ACAGCTCCCG CCCCGTTGTC CTCTGTCTCT CCGGCCACGA CCCCAGTGGC GGCGCCGGCT TGCAGGCAGA TATCGAAGCC CTGATCGCCC AAGGCTGCCA CGCTGCACCT GCAGTGACCG CCCTGACCGT GCAGGATACC GTCAACGTTT CCGACTTCCG CGTGCTCGAC CGCGAGTGGG TGCTGGCCCA GGCCAATGCC GTGCTGGCCG ACTCCACGGT GGCCGCCGTC AAGTTGGGCA TGCTCGGCTC GATCGAGATG GTCGACACCG TCGCCGAACT GCTGGCCGCC CACCCTCACC TGCCGCTGGT CTGCGACCCG GTGCTGCGTG CCGGTGGCGG TGGCCGCCTG GGCAAGGACG AAGTGGGCTA CGCCCTGCGT GAACGGTTGC TGCCGCTGGC GACCATCGCC ACGCCGAACC TGCCCGAAGC ACGCATCCTC GCAGAACTGC CCGAGGGCAC CGCTGACGAA TGTGCCGAGA AACTGTTGCC GTTCTGTAGA CACCTGCTGA TTACCGGCGG TCACGGCGAC GAAGACGAAA TCCACAACCG CCTGTACACC CAGGACGGCC AGCACTTCAC TTGGACTTGC CAGCGCCTGC CGGGCAGCTA CCATGGCTCG GGCTGCACCC TGGCCAGCGC CCTGGCCGGC CGCCTGGCGC TCGGCGAGCA GTTGGAAAGC GCCGTGCGCA CCGCCCTGGA CTACACCTGG CGCACCCTGC GTGACGCCGA GCAACTGGGC AAGGGCCAAT ACGTGCCGCG CCGCCTGCCC CTGGACTTCT GCTCCTGA
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Protein sequence | MNTYSSRPVV LCLSGHDPSG GAGLQADIEA LIAQGCHAAP AVTALTVQDT VNVSDFRVLD REWVLAQANA VLADSTVAAV KLGMLGSIEM VDTVAELLAA HPHLPLVCDP VLRAGGGGRL GKDEVGYALR ERLLPLATIA TPNLPEARIL AELPEGTADE CAEKLLPFCR HLLITGGHGD EDEIHNRLYT QDGQHFTWTC QRLPGSYHGS GCTLASALAG RLALGEQLES AVRTALDYTW RTLRDAEQLG KGQYVPRRLP LDFCS
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