Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4625 |
Symbol | |
ID | 1042636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 5249996 |
End bp | 5250682 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637148023 |
Product | LrgB family protein |
Protein accession | NP_746734 |
Protein GI | 26991309 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1346] Putative effector of murein hydrolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0669725 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCCTTG AACCCATGCC GCTGTTCTGG TTGGCCTTGA CCTTGCTGGC TTACCTGGGC AGCCGTTGGT TGTATCGGCG TAGCCAGCGC TACCTGCTGT CGCCGTTGAT CCTGGTGCCG GTGTTGCTGC TGGCTGTGGC CGTGCCGCTG CATACGGCCT ATGCCGAGTA TGCGCGCAAC ACCCACTGGT TGATGGGCGT GCTCGGCCCG GTGACTGTCG CCTTCGCGGT GCCGATCTGG CAGCAGCGGG CCATGCTGGC GCGTCATTGG CCGGCCCTGA TGGTGGGCAT GGTCGCCGGC AGCAGTGCCT CGATCGCCAG CTCCTGGGGG CTGGCGCACC TGTTGGCGCT GGACAGCGCA ACCAGCCTGT CGCTGGTGCC GCGTTCGATC ACCACGCCAT TTGCCATGCC CCTGGCCCAT GACCTGGGTG GGGTGCCAGA ACTGACCGCG GTGTTCGTGA TGTTCACCGG CGTGCTCGGT GCCATGTTCG GCGGTGTGCT GTTGCGTTGG TTGCCGCTGC GTACGCCGTT GGCACGGGGG GCGCTGTTCG GTGTTGGCGC GCATGGTGCC GGGGTCAGCC GGGCGCAGGA AGTGGGCCGT GAGGAAGGCT CGGTGGCCGG CCTGGTGATG GTCCTGACCG GGCTGCTTAA CCTGTTCGCG GCGCCTTTGT TGGCCTTGCT GCTCTGA
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Protein sequence | MSLEPMPLFW LALTLLAYLG SRWLYRRSQR YLLSPLILVP VLLLAVAVPL HTAYAEYARN THWLMGVLGP VTVAFAVPIW QQRAMLARHW PALMVGMVAG SSASIASSWG LAHLLALDSA TSLSLVPRSI TTPFAMPLAH DLGGVPELTA VFVMFTGVLG AMFGGVLLRW LPLRTPLARG ALFGVGAHGA GVSRAQEVGR EEGSVAGLVM VLTGLLNLFA APLLALLL
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