Gene PP_4608 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_4608 
Symbol 
ID1042203 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp5230209 
End bp5230784 
Gene Length576 bp 
Protein Length191 aa 
Translation table11 
GC content66% 
IMG OID637148006 
ProductECF subfamily RNA polymerase sigma factor 
Protein accessionNP_746717 
Protein GI26991292 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCGAGC CAGGGGATAT CATCGAGCCT CACGCTGACA GCGCAGGCGC ACGTGCACGT 
TTCGTCCAGG TGTTCCAGGC CCAGCGTGCG CGTATGGAGG CGTTGGTAAG CCGTCGGGTC
GGCTGCCGCG CCACCGCTTC GGACCTGGTC CAGGAATTGT TCCTTCGTTT CTGGCGTCGC
CCCGAGGTCA AGGTCGAGGC GCTGGACACT TACCTGCTGC GTTGCGCGGG CAACCTGGCC
ATAGACCACC TGCGCAGCGA AAGTAGCCGC GAACGCGTAG CCGAAGCCGC TGTGCCGGTG
AGCGAGGCGA GCCTGGCCCA GGCCCCTGAG CAGGCCGTGG AGGTCGACCA CGACTTGCAG
CGTATCGAGG CCACCTTGCG TGCCTTGCCC GAGCGCACCC GGCAGATCTT CCTGCTCAAC
CGCATTCACG GCTGCAAGTA CAGCGAGATC GCCAAAGCCA TGCAGCTGTC ACAGAGCGCC
GTGGAAAAGC ATATGATGCG CGCCCTTGAA GCGTGCAAGG CGAGTGTTGC CGAGCCCGCG
TCCACCCCAC GCCGGCCAGG GAGCGCCCGT CGATGA
 
Protein sequence
MSEPGDIIEP HADSAGARAR FVQVFQAQRA RMEALVSRRV GCRATASDLV QELFLRFWRR 
PEVKVEALDT YLLRCAGNLA IDHLRSESSR ERVAEAAVPV SEASLAQAPE QAVEVDHDLQ
RIEATLRALP ERTRQIFLLN RIHGCKYSEI AKAMQLSQSA VEKHMMRALE ACKASVAEPA
STPRRPGSAR R