| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4322 |
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| Symbol | ccmF |
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| ID | 1041632 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 4912709 |
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| End bp | 4914697 |
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| Gene Length | 1989 bp |
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| Protein Length | 662 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637147719 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | NP_746437 |
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| Protein GI | 26991012 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.563124 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCAG CACTGGTAGT CCCCGAACTG GGCCAGTTGG CGATGATTCT GGCCATCTGC
TTTGCCGTCG TACAGGCCAG TGTGCCGTTG CTTGGCGCGT GGCGTGGCGA CAGCCTGTGG
ATGAGCCTGG CGCGGCCGGC AGCCTGGGGG CAGTTCGCCT TCCTGGCGTT TGCCTTTGCC
TGCCTGACCC ATGCCTTCAT GACAGACAAT TTCTCGGTCG CCTATGTGGC CAGCAACTCC
AACAGCGCCT TGCCCTGGTA CTACAAGTTC AGTGCGGTGT GGGGCGCCCA TGAGGGTTCG
TTGCTGCTTT GGGCGCTGAT CCTTGGCGGC TGGACCTTTG CCGTGTCGGT GTTCTCCCGG
CAGTTGCCGC AGGTGATGCT GGCCCGCGTG CTGGCGGTAA TGGGCATGAT CAGCGTGGGC
TTCCTGAGCT TCCTGATCAT TACTTCCAAC CCGTTCCAGC GCCTGCTGCC GCAGGTGCCG
ACCGATGGCC GTGACCTCAA CCCGCTGTTG CAGGACTTTG GCCTGATCGT TCACCCACCC
ATGCTCTACA TGGGCTATGT GGGCTTCTCG GTGGCTTTCG CGTTCGCCAT TGCCGCCTTG
CTCGGCGGCC GGCTGGACGC TGCCTGGGCG CGCTGGTCGC GGCCGTGGAC CATCGTCGCC
TGGGCTTTCC TGGGTGTTGG CATCACCTTG GGGTCGTGGT GGGCCTACTA CGAACTGGGC
TGGGGTGGCT GGTGGTTCTG GGACCCGGTG GAAAACGCCT CGTTCATGCC TTGGCTGGTG
GGCACCGCAC TGATCCACTC GCTGGCGGTG ACCGAGAAAC GCGGGGTGTT CAAGAGCTGG
ACCGTGCTGC TGGCAATTGC CGCATTCTCC CTGAGCCTGC TGGGTACCTT CCTGGTGCGT
TCCGGAGTGC TGACCTCGGT GCACGCGTTT GCCGCCGACC CGTCGCGGGG TATTTTCATC
CTGTTTTTCC TGCTGTTCGT GGTCGGCGGC TCGCTCACCC TGTTCGCCCT GCGCGCACCG
GTGGTCAAGA GCCAGGTCGG TTTCGCCCTG TGGTCGCGTG AAACGCTGCT GCTGGCCAAC
AACCTGGTGC TGGTGGTCGC GGCTTCGATG ATTCTGCTCG GTACCCTGTA CCCATTGGTG
CTCGATGCCC TGACCGGGGC CAAGCTGTCG GTCGGCCCGC CCTATTTCGA CGCCTTGTTC
CTGCCACTGA TGGCGCTGCT GATGGTGGTG CTGAGCGTGG GCGTGGTGGT GCGCTGGAAG
GACACCCCGG GCAAATGGTT GGTCAGCATG ATGACCCCGG TATTGATCGG CAGTGCCATC
CTTGCACCGG TTGCCGGCTT TATCGTCGAC GACTTCGACT GGCCGACGCT GACGGCCTTC
GCCCTGGCCG CCTGGGTAGT GCTTGGCGGG CTGCGTGACA TTTTCGACAA GACCCGCCAC
AAGGGCCTGG TCAAAGGCCT GCCGGGCCTG GGCCGCAGCT ACTGGGGCAT GCAACTGGCG
CACCTGGGCC TGGCGGTGTG TGCGCTGGGC GTGGTGCTGT CCAGCAACAA CAGCGCCGAG
CGCGACCTGC GCATGGCGCC GGGCGAAAGC GTGGAGCTGG GTGGCTACCA CTTCCTGTTC
CAGGGCGCCA AGCACTTCGA GGGGCCGAAC TTCATCTCTG ACAAGGGCAC CATCGTGGTC
AGCCGCGAGG GCCGTGAAGT GACCACACTG TACCCAGAGA AGCGCCTGTA CACCGTGCAA
CAGTCGATGA TGACCGAAGC GGGCATCGAC GCCGGCTTTA CCCGCGACCT GTACGTCGCG
CTTGGCGAGC CACTGGAGAA TGGCGCCTGG GCTGTGCGCG TACATATTAA GCCTTACGTC
CGCTGGATCT GGCTGGGCGG TCTGCTGACC GGCCTGGGCG GGTTGCTGGC GGCCCTCGAC
CGGCGCTACC GCGTCAAGGT CAAGACCCGG GTGCGTGATG TCCTGGGCGT GTCTGGAGCA
GCTGCATGA
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| Protein sequence | MNAALVVPEL GQLAMILAIC FAVVQASVPL LGAWRGDSLW MSLARPAAWG QFAFLAFAFA
CLTHAFMTDN FSVAYVASNS NSALPWYYKF SAVWGAHEGS LLLWALILGG WTFAVSVFSR
QLPQVMLARV LAVMGMISVG FLSFLIITSN PFQRLLPQVP TDGRDLNPLL QDFGLIVHPP
MLYMGYVGFS VAFAFAIAAL LGGRLDAAWA RWSRPWTIVA WAFLGVGITL GSWWAYYELG
WGGWWFWDPV ENASFMPWLV GTALIHSLAV TEKRGVFKSW TVLLAIAAFS LSLLGTFLVR
SGVLTSVHAF AADPSRGIFI LFFLLFVVGG SLTLFALRAP VVKSQVGFAL WSRETLLLAN
NLVLVVAASM ILLGTLYPLV LDALTGAKLS VGPPYFDALF LPLMALLMVV LSVGVVVRWK
DTPGKWLVSM MTPVLIGSAI LAPVAGFIVD DFDWPTLTAF ALAAWVVLGG LRDIFDKTRH
KGLVKGLPGL GRSYWGMQLA HLGLAVCALG VVLSSNNSAE RDLRMAPGES VELGGYHFLF
QGAKHFEGPN FISDKGTIVV SREGREVTTL YPEKRLYTVQ QSMMTEAGID AGFTRDLYVA
LGEPLENGAW AVRVHIKPYV RWIWLGGLLT GLGGLLAALD RRYRVKVKTR VRDVLGVSGA
AA
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