Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4099 |
Symbol | gacA |
ID | 1042216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 4635113 |
End bp | 4635751 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637147501 |
Product | DNA-binding response regulator GacA |
Protein accession | NP_746219 |
Protein GI | 26990794 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.427607 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0594882 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGATTAGGG TCTTAGTGGT CGATGATCAC GATCTGGTAC GAACCGGTAT TACACGGATG TTGGCCGACA TCGACGGCCT GCAGGTGGTG GGTGAGGGAG ATTCCGGCGA GTCGGCACTG AAACTGGCCC GGGAGCTGAA ACCGGACGTT GTGCTGATGG ATGTGAAAAT GCCCGGCATC GGCGGCCTGG AGGCCACCCG CAAACTGCTG CGCAGCCACC CTGACATCAA GGTAGTGGCG GTGACGGTGT GCGAGGAAGA CCCGTTCCCC ACACGCTTGT TGCAGGCCGG CGCTGCCGGC TACCTGACCA AGGGTGCAGG CCTTGACGAA ATGGTCCAGG CCATTCGTCT GGCCTTTGCC GGCCAGCGCT ATATCAGCCC GCAGATCGCC CAGCAGTTGG CGCTGAAACC GTTCCAGCCG CAGGGGTCTC CGTTCGACGC GTTGTCCGAA CGGGAAATCC AGATTGCCCT GATGATCGTC GGCTGCCAGA AAGTGCAGAT CATCTCCGAC AAGTTGTGCC TCTCGCCCAA GACCGTCAAT ACTTACCGTT ATCGGATCTT TGAAAAACTC TCGGTCACCA GCGACGTCGA ACTGACCTTG CTGGCCGTTC GCCACGGTAT GGTTGACGCA AGCCTGTAA
|
Protein sequence | MIRVLVVDDH DLVRTGITRM LADIDGLQVV GEGDSGESAL KLARELKPDV VLMDVKMPGI GGLEATRKLL RSHPDIKVVA VTVCEEDPFP TRLLQAGAAG YLTKGAGLDE MVQAIRLAFA GQRYISPQIA QQLALKPFQP QGSPFDALSE REIQIALMIV GCQKVQIISD KLCLSPKTVN TYRYRIFEKL SVTSDVELTL LAVRHGMVDA SL
|
| |