| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4071 |
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| Symbol | |
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| ID | 1042157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 4596179 |
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| End bp | 4599805 |
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| Gene Length | 3627 bp |
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| Protein Length | 1208 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637147478 |
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| Product | hypothetical protein |
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| Protein accession | NP_746197 |
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| Protein GI | 26990772 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000209226 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAATCAAC TCTGGAAGTA CCTCAAACGT TGGGGCTGGC CGCTGATGAC CCGTATCGGT
CTGGCAATGC CGCTGCTACT TGGGCTTGGC GCTGTGCTGA TGCTGGTCGC CATCTGGTGG
CTCGGCCCGC AATGGACGTG GCGCGATCAG CAGCCGTTGG CCAGTGTGGC GCATCGTAGT
ATGGCCAGCC TGGTGTTCGT GTTGGTGGCG CTGTTGAGCT GGCTGGTTGT CTTGAGAACG
CGCTTTCGTC GCTTGCAAGC AGAACGTCAG CAGGCGATGG CTGCCGAGGT GGATCCGACG
CAACCGTTCG TTCATGCACA AGAGAAGGCG TTGAGCCAAG GGCTCGCACG CTACCTGGAC
AATGCCGGTG GGCGTCGCGC GCTGTACCGA TTGCCGTGGT ACCTCGTGCT GGGCGCCAGG
CAGGCCGGCA AGAGCAGCTT TATTGACTGC ACCGATCAAA GTTTCTCGTT GACCCGCATC
GACAAGGCGC AGGCACGGGG CCGGCCAGCG CAGGCGCTCG CCTACCCCGT GGGGTGGTGG
ATCAGCAATG ATGCGGTGAT CATCGACCCG CCCGGTGCCT TTATCAGCCA GAACGGCCCC
GCAGATTCGC TGGGCAGTGA CTCCACTGAC GTTGAGTCTT CGGTACCGTC TGGAACCCAA
GCCAAACTGT GGCAGCATCT GTTGGATTGG CTGCAGCGCA ATCGAAGCCA GAGAGCCCTC
AACGGCCTGG TGCTGGTTGT CGACCTGCCT GCGCTACTGC ACGGTACCGT CGAGCAACGC
ACGGCCCTTG CCCACCTGCT GCGCACACGT CTTTACGAGG TGAGCAGCCA GTTGGGCTCG
CGCTTGCCGC TGTATGTCGT GTTGAGCAAG TTCGATCTGC TGGACGGCTT CGACCAATTC
TACAGCAAGC TTTCGGCCGC CAAGCGCAAT AGCCTGTTTG GATTCACGTT CAAGCTGGAT
GCTGTCGACA CCTTCGACGC TTGGCTGGGC GAGTATGGCG AACACTACGA TCGGTTGCTG
GAGCAGCTGT TCGAGCAGGT GATCGATCGT CTGGACGTGC AGGGTAGCCC TGCGTTGCGT
TCACGTCTCT ACTCACTGCA TAGGCAGTTG CTCGGGTTGC GTCCAATGCT GTTGAGTTTT
CTGCGCGAGA CCTTGGCAAG TGACCGTTTC ACCACCCCGG CGCTGGTGCG CGGTGTGTAT
TGGTCGTCAG TCGTACAGCA CGGTGACGTG CGCAACGCCT TTGTCCGTGA GGCGGCGCAG
CCTTACAAGA CCAGCCTCCC GTTGCTTGAG GGCAAGCCGC AGGCCAAGGC GTTGGCCTAC
TTCATTCAAC AGGCCTTTGG GCGGGTCATC TACAAAGAGG CCGGCCTTGC CGGCGATAAC
GTCAGGGTGG CTCGGCGCAA GCGCCAACTG CTGTGGGTGG GTTCTTCTGT AGGCGTTCTG
GCCTTCTGCG TCGCCATCGC CAGCTGGCAT CGTTACTTCG ACATCAATGG CGTCAAGGCC
GCCAGCGTGC TGGCCAAGAG CCGGGAGTAC AGCCATCACG AAGTGGATCA GCGTCTGGAC
CCGACCGGGC GCAACTTGCT GGAGCCGCTG GACCAGATCC GCGATGCGGT AGCAGTGTTT
GGCGACTACC GCGCTGCGTG GCCGGGTGTT GCTGATCTGG GGCTGTACCA GGGCCGTACC
ATCGGGCCGA CCGTGGATGA GGCGTACCTC AGCTTGTTGT CCAGGCGCTT CTTGCCTGCG
TTGGCCAGCG GCGTGATCGA GGCCATGGAT GCGGCGCCCC CCGGCAGCGA GCAGCAAATG
GCCGCGCTCC GGGTTTACCG GATGCTTGAG GATCGCCGGA ACCGTCGAGC GGAATGGGTC
GAGGACTGGA TGGCGCGACA GTGGCAACAG GCGTTCCCCG GCCAGGGGCA GCTGCAACGA
GACCTCATGC GGCACCTGAA GTATGCGCTG ACCTACGCGG ATACCGACCT GCCGCAGTAT
CGCCAGCGTG TCAGCCACGT GCAGCAGACA TTGCGTAAGG TGCCGTTGCC ACAACGCGTG
TATGCGGGCC TGAAGCAGCA GGCCCAGGAG CAGTTGCATA CCGGTCTGGA CCTGCGTCAT
CAGGTGGGGC CTGCGTTCGA TGTCGTTTAC CAGCTGTCTT CCGGCTCGAG CCAGGGCGAC
AATGGTGTTT TGCTGGCGCC AATGCTCACT GCCAAAGGCT TCAAGGAGTA CTTTGAACCG
CGTAGTCAGC GCTTTACGGA AATGGCCATG ATCGACCAGT GGGCACTGGG GGAACGTGCT
CAACTGGATT ACTCCGATGC CGACCAGGCT GCGCTGAACG AGCGCCTGCG CAACCTGTAC
AGCGCCGACT ACATCGACAG CTGGCGCCGC GCCTTGAACG CATTCTCCGT GGCGGATTTT
CGAGACCTGG ATCATGGCGT CACGATCCTT GAACAGTTGG CCGGGCCAGC GGCGCCGTTG
CACCGATTGC TGGAGACGGT TCGCGACAAC AGTTCGCTGT TATCACCGGT TAATGTTGGC
GTGGCGGATG AGGCCCCTTC GCCCGTTTCG ATCAACAGCA AGCCTGAGCA ACAACAGGCG
CTGGTCATTC AGCGGGCGTT TGCAGGCTTG AGCGCCATGT TGCACGCTGC AGGCGAAAAA
CCGAGCTACT ACGATGAAAC CCACGCAGCC ATAGTCGCCG TCCACGACTA TGCCAAGGCG
GTACAGGGTA GCCCAGACCG AGGCAAGGCT GCGCTGCACG CAGTGCATCA ACGCTTTTCA
ATGACCGGGC ACGACCCCAT CGGCACCTTG CAACGCGTTG CCACTGGCTT GCCGGAGCCA
ATCAATCACC ACGTTAGAAA GGTGGCACAT CAAACGGCAC AGGTGCTGAA CGTTGAAGCG
CTGCGCGAGT TGGAGCGGCG ATGGGATGCT GAAGTCTACA GCTTCTTCCA GCAGCGCCTG
GCAGAGCGCT ACCCTTTCGT AGTCAGGGCA CCCGACGCTT CGCTGGAAGA CTTTGAAGCG
TTCTTCGGGC CGAATGGGCG ACTGCAGCAG TTCCAGGATC AATATCTGAA GCTTTTCCTC
AAGGACAATC TGGAAGCCTT GCAGAATGGT TTGCAGGGGC GATCCCTGAT CCGTACCGAT
GTGATCGAGC AGCTGGAACG GGCCGATCGC ATCCGCGAAA CGTTCTTTGA TCAGCGCGGT
AACCTCAGCG TGCAGTTCAG TATCGAGCCG TTGGGGCTTA GTGCAAATCA ACGCACCAGC
CTGCTGGATC TGGATGGCCA GCTGATTTCC TACACCCACG GCCCAAGCCA GATCACCGGT
ATTGTCTGGC CCAATACCTT GGGGCAACAC GTGCGCAGCA ACCTGACCCT GCTCAGGCAG
AACGGCAATA GCAGCAGCCT GGAGTATCGA GGGCCTTGGT CGATGTTTCG CCTGCTGAGC
CGCGGTGCGC TCAATGGGCG TACGGCAACC AGCGTGGACC TGAGCTTCAA AACAGGTGAT
GGTGTGATGC GCTACCGGCT GAACGCGGAA AAGGCCTTCA ATCCTATTAC TCAACAACCG
TTCAAAGGTT TTCGGTTGCC CCGAGGGTTG TTGCAACAGC CAGTCAGGGT GGCGTTGGCC
GAACAGGCGG ATGTGCCTGT CATGTAG
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| Protein sequence | MNQLWKYLKR WGWPLMTRIG LAMPLLLGLG AVLMLVAIWW LGPQWTWRDQ QPLASVAHRS
MASLVFVLVA LLSWLVVLRT RFRRLQAERQ QAMAAEVDPT QPFVHAQEKA LSQGLARYLD
NAGGRRALYR LPWYLVLGAR QAGKSSFIDC TDQSFSLTRI DKAQARGRPA QALAYPVGWW
ISNDAVIIDP PGAFISQNGP ADSLGSDSTD VESSVPSGTQ AKLWQHLLDW LQRNRSQRAL
NGLVLVVDLP ALLHGTVEQR TALAHLLRTR LYEVSSQLGS RLPLYVVLSK FDLLDGFDQF
YSKLSAAKRN SLFGFTFKLD AVDTFDAWLG EYGEHYDRLL EQLFEQVIDR LDVQGSPALR
SRLYSLHRQL LGLRPMLLSF LRETLASDRF TTPALVRGVY WSSVVQHGDV RNAFVREAAQ
PYKTSLPLLE GKPQAKALAY FIQQAFGRVI YKEAGLAGDN VRVARRKRQL LWVGSSVGVL
AFCVAIASWH RYFDINGVKA ASVLAKSREY SHHEVDQRLD PTGRNLLEPL DQIRDAVAVF
GDYRAAWPGV ADLGLYQGRT IGPTVDEAYL SLLSRRFLPA LASGVIEAMD AAPPGSEQQM
AALRVYRMLE DRRNRRAEWV EDWMARQWQQ AFPGQGQLQR DLMRHLKYAL TYADTDLPQY
RQRVSHVQQT LRKVPLPQRV YAGLKQQAQE QLHTGLDLRH QVGPAFDVVY QLSSGSSQGD
NGVLLAPMLT AKGFKEYFEP RSQRFTEMAM IDQWALGERA QLDYSDADQA ALNERLRNLY
SADYIDSWRR ALNAFSVADF RDLDHGVTIL EQLAGPAAPL HRLLETVRDN SSLLSPVNVG
VADEAPSPVS INSKPEQQQA LVIQRAFAGL SAMLHAAGEK PSYYDETHAA IVAVHDYAKA
VQGSPDRGKA ALHAVHQRFS MTGHDPIGTL QRVATGLPEP INHHVRKVAH QTAQVLNVEA
LRELERRWDA EVYSFFQQRL AERYPFVVRA PDASLEDFEA FFGPNGRLQQ FQDQYLKLFL
KDNLEALQNG LQGRSLIRTD VIEQLERADR IRETFFDQRG NLSVQFSIEP LGLSANQRTS
LLDLDGQLIS YTHGPSQITG IVWPNTLGQH VRSNLTLLRQ NGNSSSLEYR GPWSMFRLLS
RGALNGRTAT SVDLSFKTGD GVMRYRLNAE KAFNPITQQP FKGFRLPRGL LQQPVRVALA
EQADVPVM
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