| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4051 |
|---|
| Symbol | |
|---|
| ID | 1042111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 4566329 |
|---|
| End bp | 4568071 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637147458 |
|---|
| Product | malto-oligosyltrehalose trehalohydrolase |
|---|
| Protein accession | NP_746177 |
|---|
| Protein GI | 26990752 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.10082 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACAGAC ATGGCGCACA CTTGCTGGAC GCCACGTCGG CGCGCTTCGC CCTCTGGGCG
CCGGATGCGC GCAGCGTGAG CGTGGAAGTG GAGCAGCAGC CGGCCATCGA ACTGCTGCCG
GATGATGAGG GTTGGTACAG CGGCGTGGCG CCATGCCAGG CCGGTGACCG TTACCACTAC
CGCATCGACG GGGAGCTGCA GGTGGCCGAC CCGGCCTCGC GCTACCAGCC CGACGGCGTA
CACGGGCCAA GCCAGGTAGT GGATGTGGCC GGTTACGCCT GGCAACACCC GTGGCAAGGC
CGGCCTTGGC ATGAGGCCGT GATCCAGGAG GTGCATGTCG GCCTGCTCGG GGGTTACGCC
GGGGTTGCCC GGCAACTGCC GCGCCTGGCC GAACTGGGTA TCAGCGCGAT CGAGCTGATG
CCGCTGGGGC AGTTCCCCGG CGAACGCAAT TGGGGCTACG ACGGCGTACT CCCTTACGCC
CCACAGAACA CCTACGGCAG CCCCGAGCAG CTGTGCGCAC TGGTGGACCA GGCCCACGGC
CACGGGCTGA TGGTGCTGGT CGATGTGGTG TACAACCACT TCGGACCTGA CGGCAATTAC
CTGCACCAGT ACGCCAGCCC TTTCTTCCGC GAGGACCGGC AGACACCTTG GGGCGCGGCC
ATCGATTTTC GCCGCCCGCA GGTGCGCGAG TACTTTATCC AGAATGCCCT GATGTGGCTG
TGCGACTACC GCTGCGACGG CCTGCGCCTG GATGCGGTGC ATGCCATCGA CCAGCCCGAC
TTCCTGATCG AGTTGGCCCA ACGGGTACGC GCCGCCGTAG AACCGGGCCG GCACGTGTGG
CTGGTGCTGG AGAACGAGCA CAACCAGGCG GGCCTGCTGG AACAGGGTTA CGACGCCCAG
TGGAACGATG ACGGCCACAA TGCCCTGCAC GTGCTGCTGA CCGGTGAAAC CGAAGGTTAC
TATGCCGACT ACCAGCATCG CCCCATCGAC CAACTGGCAC GGTGCCTTGG CGAAGGTTTC
GTGTTCCAGG GCCAGGCCAA CCGGCACGGC AAACCACGCG GCGAACCCAG CGGGCATTTG
CCGCCCAGCG CCTTCGTGTT GTTCCTGCAG AACCACGACC AGATCGGCAA CCGCGCGCTG
GGTGAGCGCC TGACCCGCCT ATGCCCCGCG CCAGCCCTGC GTGCAGCCAC CGGCCTGTTG
CTGCTGGCCC CCATGGTTCC GCTGCTTTTC ATGGGCGACG AAGCCGGCAG TTGCCAGCCG
TTCCTGTTTT TTACCGACTT CCATGACGCG CTGGCCGACG CGGTACGCGA AGGCCGTCGT
GGCGAGTTCG CCCACTTCGC CGCGTTCGCC GACCCCAAGC AGCGTGAGCA CATTCCCGAC
CCCAACGCCG AACAGACATT CGCCTCTTCA CGCCCGCAGA ACAAGGCGGT GATCGCCGGC
TGGCACGGCC TTTACCAGCA ACTGCTCGAC CTGCGCCGCC GCCACATCAT CCCGCACTTG
CCCGGCAGCC GTGCGCTGGG CGCCGAGGTG CACGCTGACA AAGCGCTGAC CGCGCGCTGG
CAGCTGGGCA ACGGCAACAC TCTGCGCATC GACCTGAACC TGGCCGACAC CCCGCAGGCG
GTCGAACTGC CCGCGCCATC CACACGGCTG TTCGACAGCA GCGACACCCG CCACCCGGAT
ACCCACCTGG CTGCCTACAG CTGTGTGGTC AGCCTGCTTC CCCCTGCCCA GGAGCACCCA
TGA
|
|---|
| Protein sequence | MHRHGAHLLD ATSARFALWA PDARSVSVEV EQQPAIELLP DDEGWYSGVA PCQAGDRYHY
RIDGELQVAD PASRYQPDGV HGPSQVVDVA GYAWQHPWQG RPWHEAVIQE VHVGLLGGYA
GVARQLPRLA ELGISAIELM PLGQFPGERN WGYDGVLPYA PQNTYGSPEQ LCALVDQAHG
HGLMVLVDVV YNHFGPDGNY LHQYASPFFR EDRQTPWGAA IDFRRPQVRE YFIQNALMWL
CDYRCDGLRL DAVHAIDQPD FLIELAQRVR AAVEPGRHVW LVLENEHNQA GLLEQGYDAQ
WNDDGHNALH VLLTGETEGY YADYQHRPID QLARCLGEGF VFQGQANRHG KPRGEPSGHL
PPSAFVLFLQ NHDQIGNRAL GERLTRLCPA PALRAATGLL LLAPMVPLLF MGDEAGSCQP
FLFFTDFHDA LADAVREGRR GEFAHFAAFA DPKQREHIPD PNAEQTFASS RPQNKAVIAG
WHGLYQQLLD LRRRHIIPHL PGSRALGAEV HADKALTARW QLGNGNTLRI DLNLADTPQA
VELPAPSTRL FDSSDTRHPD THLAAYSCVV SLLPPAQEHP
|
|---|
| |