| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4019 |
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| Symbol | topB |
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| ID | 1046538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 4530160 |
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| End bp | 4532121 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637147430 |
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| Product | DNA topoisomerase III |
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| Protein accession | NP_746149 |
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| Protein GI | 26990724 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.523187 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCTGT TTCTCTGCGA AAAACCCTCC CAGGCAAAAG ACATCGCCAA AGTGCTCGGC
GCCAACCGCA AAGGCGACGG CTGCTGGCAA GGCACCGACA TCTGCGTAAC CTGGTGCATC
GGCCACCTGC TGGAAACCGC CCCGCCCGAC AGCTACGACG AACGTTACAA GCGCTGGAAC
CTGGCCGACC TGCCGATCAT TCCAGACAAG TGGAAGATGC TGGTAAAGCC CAAGACTGCC
AGCCAGTTCA AGGCGGTCAA GCGCCTGCTC GGTGAAGCGC GGGAGCTGGT GATTGCCACC
GACGCCGACC GCGAAGGCGA AATGATTGCC CGCGAGCTGG TCGAGCATTG CCGCTACCGG
GGCCCGGTGC AGCGCCTGTG GCTGTCGGCA CTGGACGACG CCTCCATCCG CAAGGCCCTG
GCACGCCTGC TGCCAGGCCA CGAGACGTTC AACCTGTACC ACTCGGCACT GGGCCGATCG
CGCGCCGACT GGCTGATCGG CATGAACATG AGCCGGCTGT TCACCCTGCT GGGCCGCCAA
TCCGGCTACC AGGGTGTGCT GCCGGTAGGC CGCGTACAAA CGCCTACCTT GCGCCTGGTG
GTCGACCGCG ACCGCAGCAT CGCCAACTTC GTGCCGGTGC CGTTCTGGGC CATCGACGTA
CAGCTGGAAC ACGCCGGCCA ACGCTTCAAT GCCCAATGGC GCGCCCCCGA AGACGCCTGC
GACGACCAAG GCCGCTGCCT GAAGCAAAGC CTGGCTCAGC AGGCCGCGGC CGACATCGGC
CATGCCGGCA CTGCCCGAGC GGTAAAGGTG GCGACCGAGC GTGTGCGCGA AGCAGCACCG
CTACCCTTCG ACCTTGGCAC CCTGCAGGAG CTGTGCTCGA AAAAGTTCGG CCTCGGCGCC
CAGGAAACCC TCGACATTGC CCAGGCACTG TACGAAACAC ACAAGCTAAT CACCTACCCG
CGCAGCGATT GCGGCTATTT GCCACAAAGC CAGCACGCCG AGGCACCCGC CATCCTTGCC
GCCCTGCAAC GGGCCGATGC CAGCCTTGCG CCGCTGCAGC CCTACCTGGA GCCGCAACGC
CGCTCGCGGG CGTGGAACGA CGCCAAGGTC AGCGCTCACC ATGGCATCAT CCCCACCGCC
GCCGCCAGCG ACCCCTCGCG CCTGCCGGCC AAGCACAAGG CCGTGTACAC CCTGATCCGC
GCCCGCTATC TGGCGCAGTT CCTGCCCAAC CATGAGTACG ACCGCACCCA GGCGGACTTC
GACTGCGCCG GTCATGCGCT GCGTGCTGTG GGCAAACAGA TCGTCGAGCC GGGCTGGCGC
CGCGCCTTGC CCGAAGCGCT GACCCCGGCC AAAGGCCGCG AGGCACCACC GGCCCAGGTG
TTGCCAGCGC TGCGCGAAGG CCAGGACTGC AACGTACACG GCCTGCAACT GAAAGACCTG
TGGACCCAGC CGCCCAAGCC GTTTACCGAA GGCGACCTGA TCAAGGCGAT GAAAAACGTG
GCCAAGCTGG TGGATGACCC TCGGCTGAAG CAGAAGCTCA AGGAAACCAC CGGCATTGGC
ACCGAAGCCA CCCGCGCCAG CATCATCCAG GGCCTGCTCG ACCGCGGTTA CCTGGTGAAG
AACGGCAAGG CGTTGTCGGC CACACCTGCG GCCTTCAGCC TGATCGACGC CGTTCCCCGC
GCGATTGCCG ACCCCGGTAC CACGGCGATC TGGGAGCAGG CGCTGGACAT GGTGCAAAGC
GGCGAGATGC CCCTGGAAGA GTTCGTCGCC CGGCAGTCAG CGTGGATGGG CAAGCTGGTC
GAGCGTTGCA GCGGCATGCG CATGACCATC AGCGGGCCAG CGGCCGGGGC GGCCCCGCCC
TGGAAAAAGA AACGTCGCGG TGGCGGGAAG AGCAAAGCGA CTGGAAGCAA GGCGACCCCA
AGCAAGCCAC GGCAGGCGCG AAAAAAGCGA GCCCCCCTGT AG
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| Protein sequence | MRLFLCEKPS QAKDIAKVLG ANRKGDGCWQ GTDICVTWCI GHLLETAPPD SYDERYKRWN
LADLPIIPDK WKMLVKPKTA SQFKAVKRLL GEARELVIAT DADREGEMIA RELVEHCRYR
GPVQRLWLSA LDDASIRKAL ARLLPGHETF NLYHSALGRS RADWLIGMNM SRLFTLLGRQ
SGYQGVLPVG RVQTPTLRLV VDRDRSIANF VPVPFWAIDV QLEHAGQRFN AQWRAPEDAC
DDQGRCLKQS LAQQAAADIG HAGTARAVKV ATERVREAAP LPFDLGTLQE LCSKKFGLGA
QETLDIAQAL YETHKLITYP RSDCGYLPQS QHAEAPAILA ALQRADASLA PLQPYLEPQR
RSRAWNDAKV SAHHGIIPTA AASDPSRLPA KHKAVYTLIR ARYLAQFLPN HEYDRTQADF
DCAGHALRAV GKQIVEPGWR RALPEALTPA KGREAPPAQV LPALREGQDC NVHGLQLKDL
WTQPPKPFTE GDLIKAMKNV AKLVDDPRLK QKLKETTGIG TEATRASIIQ GLLDRGYLVK
NGKALSATPA AFSLIDAVPR AIADPGTTAI WEQALDMVQS GEMPLEEFVA RQSAWMGKLV
ERCSGMRMTI SGPAAGAAPP WKKKRRGGGK SKATGSKATP SKPRQARKKR APL
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