Gene PP_3949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_3949 
Symbol 
ID1046615 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp4453963 
End bp4454601 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content59% 
IMG OID637147359 
ProductTetR family transcriptional regulator 
Protein accessionNP_746079 
Protein GI26990654 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.549729 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACTC GCAAAACCGG TGTTCGCGCC CAGCAGGCCG ACCGTACCCG GGACAATATT 
CTCAAGGCCG CAGTGAAGGT CTTCAGCAAG GAAGGCTTCA CTGGCGGGCG CATCGAGCAG
ATCTCCACGC TGGCCAAGTC CAACGACCGG ATGATCTATT ACTACTTCGG TAGCAAGGAA
AAGCTGTTCA TCAGTGTGCT GGAACACATC TATGCCAGCT TCAACCAGGC CGAAGCGAAG
CTGCGCCTCG ACCTCGCCGA CCCTGAGCAG GCCCTGCGCG AGCTGGTGGC GTTTATCTGG
GACTATTATG TGCGCCACCC CGAATTCGTC ACCATCCTCG CCACCGAAAA CCTTCACCAG
GGCTTGCACG CGCGCAAGTC GCAAAACCTC AGGGCGCTGT CCGGCGAAGC GGTCGGCGTG
CTGCGGCCGA TCATCGAGGC AGGACAGGCA AAGGGCCTGT TCCGTGACGA TATCTGCATT
ACCCACGCCT ACCTGATGAT TGCCTCGCTC TGCTACTTCT ATAACTCCAA CCGCCATACG
CTCAGCTCGT TCCTGGCCGT GGACCTGGCC GACAAACAGG CCAAAGCCGA TTGGCTGACC
TTCATCAGTG ACCTTGCGCT GCGCGGCTTG CGCCGCTGA
 
Protein sequence
MQTRKTGVRA QQADRTRDNI LKAAVKVFSK EGFTGGRIEQ ISTLAKSNDR MIYYYFGSKE 
KLFISVLEHI YASFNQAEAK LRLDLADPEQ ALRELVAFIW DYYVRHPEFV TILATENLHQ
GLHARKSQNL RALSGEAVGV LRPIIEAGQA KGLFRDDICI THAYLMIASL CYFYNSNRHT
LSSFLAVDLA DKQAKADWLT FISDLALRGL RR