Gene PP_3562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_3562 
Symbol 
ID1045581 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp4041050 
End bp4041703 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content63% 
IMG OID637146977 
Producthypothetical protein 
Protein accessionNP_745699 
Protein GI26990274 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3773] Cell wall hydrolyses involved in spore germination 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCTAGAC TGAAATTCTG CCCACTGCCT GGTAATGTGC CCATGCGCCT TCACTTGATG 
CTGATCGGCT TGACCTCGGC CCTGCTCGCA GGCCCCCTGT ACGCCGCTGA CCCGGCCAAG
GCCGCCGTTG CCGAGGACAA GGCCGCAGTG CTTGAAGAAA AGGTCGTCGA AGATGCGCCG
CCCCCCAGGA AGGCAGAGAA ACTGACCCCA GGCGAAACGC AGGCAGTGGA CCCGGCTGGC
CAGGCGCCGC TGGATGACAG CATCACCTGT CTGGCACGTA CCATCTACTG GGAAGCCAAG
GGCGCCGACG CCAAAGACAT GACCGCGGTG GCCAGTGTGG TGCTCAACCG CCTGGGCCAC
GATGGCTTTC CCGATACCAT CTGCGCGGTA GTCAAACAGG GGGTGGAGAC CAAGGCCTGT
CAGTTCTCAT GGTGGTGTGA CGGGCGCCCG GACCAGGTGG AGGAACCGCA ACGCTACGAC
GTTGCCAAAG AGATCGCACG CAAGGCACTC AACCAGCAGT TGAAAGACCC CACCGGCGGT
GCGTTGTACT TTCACGACCG CACGGTGCGC CCCGACTGGG CGAAGGCTTA TCGCAAGACC
GCGCAGACCA CCCACTTCCT CTTCTACAAG CCGAACCAGA CGTTGGCCCA TTGA
 
Protein sequence
MARLKFCPLP GNVPMRLHLM LIGLTSALLA GPLYAADPAK AAVAEDKAAV LEEKVVEDAP 
PPRKAEKLTP GETQAVDPAG QAPLDDSITC LARTIYWEAK GADAKDMTAV ASVVLNRLGH
DGFPDTICAV VKQGVETKAC QFSWWCDGRP DQVEEPQRYD VAKEIARKAL NQQLKDPTGG
ALYFHDRTVR PDWAKAYRKT AQTTHFLFYK PNQTLAH