| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3478 |
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| Symbol | |
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| ID | 1046429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 3942024 |
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| End bp | 3943889 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637146893 |
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| Product | type II and III secretion system protein |
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| Protein accession | NP_745615 |
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| Protein GI | 26990190 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.883707 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.994103 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCGT CAAAGCTGTG CAAGCCTGCT CCGTTTCTGC TCGTGGCGCT GTGCGTGGCC
ATTGCCGGTT GCGGCTCCAG TGCGGTTCGC CAGGACAGCG ACCAGCTGAT GAAAGAGGGC
CAGTACGAGG CCGGCATCGC TCGCCTGGAA GAGGCCCTGC GCGACGATCC GCGTGATACA
GAGCTGAATA TCGCCCTGGC CCACAGCCGC CAGGCGGCGG TCGAGGCCCT GATTGGCCAG
GCCGACAGCG ACCGCGTCCG CCATGACTTC GCCAATGCCC GGATGGGCTA CGGCCGGGTG
CTCACCCTGG AGCCGAACAA CCGCCGCGCC CAGGAAGGCA TTCGCCAGCT GGAGCTGATC
CGCACCCTGG ACGAACGCAT AGCGCTTGGC CAGGCGGCGC TGCGCCAGGG CGACCTGTTC
GGTGCCGAAC GCTACATGCG CGAAGTCTTG CGTCTGGACC CGCAGAACCA GAAGGGCATG
ACCCTGCGCA GCGACATCGA AAACGTGCAG GCACGCACCG CGCAGCCGTA CCCGCAATTG
CGCAGCAAGC TGGAGCGGCC GGTCACCCTG GAGTTTCGCG ATGCCAACCT GAAGACCATC
TTCGAAGTGC TGTCGCAGGT GGCCGGCATC AATTTCATCT TCGACAAGGA CCTGCGCCCG
GACATGAAAG CCACCATCTT CGTGCGCGAG GTGCGCATCG AGGACGCGAT AGCGCTGCTG
CTGGAGCAAA ACCAGCTGCG CCAGAAGATC GTCAACGACA ACACCGTCAT GGTCTACCCC
GATTCGCCGC AGAAGACCAA GGACTACCAG GAACTGGTCA TGCGCACGTT CTACCTGACC
AGCATCGACG CCAACACCGC GTTGAACATG GTCAAGACCA TGCTCAAGAC CCGCGACGTG
TTCGTTGACG AGCGCCTCAA CACCCTGACC ATGCGCGACA CGTCGGACGC GGTGCGCATG
GCCGAGAAGC TGCTGCAGTC GCAGGACCAG TCCAACCCCG AGGTGGTGCT GGAAGTGGAG
GTGATGGAGG TGGCCACCTC GCGCATCCTC GACCTTGGCC TGCAATGGCC CAACACCTTC
GGCGTGCTGA GCGACGATGG CAACCCGGTC AGCGTGCTCG ACCAGCTCAA GGGCATCAAT
TCCAGCCGCA TCAGCATTGC GCCGGCGCCG CAGGCCAAGA TCAACGCCCA GGACAAGGAC
ATCAACACCC TGGCCAGCCC GGTGATCCGC GTCAGCAACC GCGAGCAAGC GCGCATCCAC
ATCGGCCAGC GGGTACCGAT CATCAGCGCC ACCTCGGTGC CGTCGACCCA AGGGCCGGTC
ATTACCGAGA GCGTCACCTA CCTGGACGTC GGCCTGAAGC TAGAAGTGCA GCCCACCGTG
CACCTGAACA ACGAAGTGGC GATCAAGGTG GCGCTGGAGG TCAGCAACGC CACCCCGCTG
GAGGCCACCC GCCAGGGCAC CATCCCGGTC CAGGTCGACA CCCGCAACGC GCAGACCAGC
CTGCGCCTGC ACGACGGCGA AACCCAGGTG CTGGCCGGCC TGGTGCGCAA CGACCACAAC
GCCAGTGGCA ACAAGATTCC CGGCCTTGGC GACATCCCGG GCCTTGGCCG GCTGTTCGGC
AGCAACAAGG ACGACATGAG CAAGAGTGAG CTGGTGCTGG CGATCACCCC GCGCATCGTG
CGTAACCTGC CGTACCAGAG CCCGTCGGAC ATGGAGTTTT CCACGGGCAC CGAGTCGGCC
ATGCAGGTGC GCCAAATGGC GCCACTGCCG CCGATGGACG TGCCTGGTAA TGCGCCGACC
ACTGAAGAAC CGGTCGTGGA CAGCCAGATG GCGGTCGCCC CGGTCAACGG GAGCCCCCGG
CCATGA
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| Protein sequence | MKSSKLCKPA PFLLVALCVA IAGCGSSAVR QDSDQLMKEG QYEAGIARLE EALRDDPRDT
ELNIALAHSR QAAVEALIGQ ADSDRVRHDF ANARMGYGRV LTLEPNNRRA QEGIRQLELI
RTLDERIALG QAALRQGDLF GAERYMREVL RLDPQNQKGM TLRSDIENVQ ARTAQPYPQL
RSKLERPVTL EFRDANLKTI FEVLSQVAGI NFIFDKDLRP DMKATIFVRE VRIEDAIALL
LEQNQLRQKI VNDNTVMVYP DSPQKTKDYQ ELVMRTFYLT SIDANTALNM VKTMLKTRDV
FVDERLNTLT MRDTSDAVRM AEKLLQSQDQ SNPEVVLEVE VMEVATSRIL DLGLQWPNTF
GVLSDDGNPV SVLDQLKGIN SSRISIAPAP QAKINAQDKD INTLASPVIR VSNREQARIH
IGQRVPIISA TSVPSTQGPV ITESVTYLDV GLKLEVQPTV HLNNEVAIKV ALEVSNATPL
EATRQGTIPV QVDTRNAQTS LRLHDGETQV LAGLVRNDHN ASGNKIPGLG DIPGLGRLFG
SNKDDMSKSE LVLAITPRIV RNLPYQSPSD MEFSTGTESA MQVRQMAPLP PMDVPGNAPT
TEEPVVDSQM AVAPVNGSPR P
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