Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3435 |
Symbol | |
ID | 1046455 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 3891014 |
End bp | 3892600 |
Gene Length | 1587 bp |
Protein Length | 528 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637146851 |
Product | diguanylate phosphodiesterase |
Protein accession | NP_745573 |
Protein GI | 26990148 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.557129 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCTTA CCGTCAAACG CCGCGCCGCA CTCAGCTGGC GCACGCTCTT GCCCTGGGTC GTCGGCGTGC TGCCGGTCAT GTGCGGCCTG GCCGTGATGA ACTGGCAGGT CGAACGTGAA ATGCAGGCCA GCAGCCACGC CACCACCCGC CAGGCGTTGG AGCACGTCGA ACACATCCTC GACAACCTGT CCCGTGCCGC CAATTCGCTA CTTCCACTGA CTGACAGCCC ATGCGAGCAG GCCCAGCTCA TGCTGCGGGC CCAGGTTACC CGCAATGCCT TCGTGCGCTC GACCAACCTG TTCAGGCACA ACAACCTTTA TTGCTCCTCG CTGTTCGGCG AGTTCGAAGA ACCGGTCAAT CCTGGCGATT ACGTCGACGG CAAGTTATGG CTGATGGACG GCAACTCGGT TACCCCGGGC CACCCGCTGC TGGTCTACCG TGCCAGCGAC GGCGACCACG GTGCAATCAC CACGGTGGAT GGCGACCACC TGCTGACAGC ACTGCGCCTG ATCGGCCCCG ATGAAGAATT GCAAATCCGC GTGGGCGACG CCTGGATGGG CAAGGACGGC GTGGTCCACA AAGGCGCCTC CCCTGCCGCC GCCAGTGCCA ACGTGCTGAT AGGCTCGACG CGTTACCCTT TCAGCGTGCA GGGCGGCTAC AGTGCCGACA AGCAAGGCCA ACTGTTACGC AGCCACTACC CTGGCCTGCT CAGCCTGCTG CTGATACTGG GTGCCCTGGC GGCGCTGGCA TGCCGCTGGC AGATTCGCCG CGCCACCTCA CCGCGTGCCG AACTGGACCG TGCCCTGCAG GCCGATGAAT TCCTGCCGTA TTTTCAGCCA GTGGTGCGCA AGGGCGATTA CCGCTGGGCC GGTGCGGAAG TGCTGATGCG CTGGCACCAC CCACGCGAAG GCCTGGTTCG TCCCGACCTG TTCATCCCCT ATGCCGAACA TAGCGGGCAG ATTGTCGCCA TGACCCGTGC GCTGCTGACA CATACCGCGC AAAGCCTGGC GCCCTATGCC GGCCTGTTGG AAGACGGCTT CCATATTGGT GTCAACATCA CCGCTGACCA CTGCCGCGAC CTCAGCCTGC TGGATGACTG CCGCACGTTC CTGCAGCACT TTCCGCCCGG CCGGGTGGTG CTGACCCTGG AACTGACAGA GCGCAAGCTG ATCGAGCCTA CGCCGGTCAC CCTTGAGTTG TTCGAAAAGC TGCATGCCAT GGGCGTGATG ATTGCCCTCG ACGATTTCGG CACCGGCCAG TCGAGCCTCA ACTACCTGCG GCAATTCAAG GTCGACTACC TGAAGATCGA CCAGAGCTTC GTTGCCATGA TCGGCGCCGA TGCGCTGTCA GTGCACATAC TCGAGACCAT CATCGAGCTG TCGGGCAAGC TGGACCTGGG CATCGTTGCC GAGGGTGTGG AAACCGACCT GCAGCGCGAC TACCTGGCCG CGCACGGGGT GGACTTCCAG CAGGGTTACC TGTTCGCCAG ACCCATGCCG GCCGCCCAGT TCCTCGAAGC CCTGGCCACT CGCCCGGGCG CAACGCAGTT GCCGCAAGAT GCGCCCCCTG AGATCATGCG CGGCTGA
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Protein sequence | MPLTVKRRAA LSWRTLLPWV VGVLPVMCGL AVMNWQVERE MQASSHATTR QALEHVEHIL DNLSRAANSL LPLTDSPCEQ AQLMLRAQVT RNAFVRSTNL FRHNNLYCSS LFGEFEEPVN PGDYVDGKLW LMDGNSVTPG HPLLVYRASD GDHGAITTVD GDHLLTALRL IGPDEELQIR VGDAWMGKDG VVHKGASPAA ASANVLIGST RYPFSVQGGY SADKQGQLLR SHYPGLLSLL LILGALAALA CRWQIRRATS PRAELDRALQ ADEFLPYFQP VVRKGDYRWA GAEVLMRWHH PREGLVRPDL FIPYAEHSGQ IVAMTRALLT HTAQSLAPYA GLLEDGFHIG VNITADHCRD LSLLDDCRTF LQHFPPGRVV LTLELTERKL IEPTPVTLEL FEKLHAMGVM IALDDFGTGQ SSLNYLRQFK VDYLKIDQSF VAMIGADALS VHILETIIEL SGKLDLGIVA EGVETDLQRD YLAAHGVDFQ QGYLFARPMP AAQFLEALAT RPGATQLPQD APPEIMRG
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