Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3342 |
Symbol | nikA |
ID | 1046986 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 3779547 |
End bp | 3781121 |
Gene Length | 1575 bp |
Protein Length | 524 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637146760 |
Product | nickel ABC transporter, periplasmic nickel-binding protein |
Protein accession | NP_745482 |
Protein GI | 26990057 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | [TIGR02294] nickel ABC transporter, periplasmic nickel-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGCAGC AGCCTGGTAA ACGAAAGCCC GCCCTGTGGG GCCTCCTTCT TCTTGCTGCG TGCGCTGCTG CGCCGGCCAG CCGCGCCGCC GAGCAAGGGC CGCAGCTGGT GTACTCCTGG CCTGTGAATG CCGGGCCGCT CGACCCGCGT GGCTATTCCC CCAACCAGAT GTACGCCCAG GCCATGGTCT ATGAACCCCT GGTGCGCTAT ACCGCCGCGG GTACGCTGGA GCCATGGCTG GCTGAGGCCT GGCAGGTTTC GGACGACGGC AAGACCTACA CGTTCACCCT TCGCGACGGC GTGCGCTTCA GCGATGGCAC ACCCTTCGAT GCGCCTGCGG CCAAAGCCAA CCTCGATGCC GTCCTGGCCA ACACTCAGCG TCACCGCTGG ATGGAACTGG TGACCACACT GGACCACGTT GAAGCGCCTG AGCGCCTGAC CCTGCGCCTG GTCCTCAAGC ACCCTTACTA CCCGACGCTG ATGGAGCTGG CCCAGGTTCG CCCATTGCGC TTTGCCTCGC CTCAGGCCAA ACCCGGCCAA CCGGCCGGTA CCGGCCCCTG GATGCGCGCC GAATCACGCC TGGGCGAATA CGACCGCTTC GTGCGCAACC CCCAGTACTG GGGGCCCAAG CCGGCCTACG GCGAGGTCAT GGTCAAGGTC ATTCCAGACC CCAACAGCCG CGCGCTGGCC CTGCAGGCCG GCGAGGTCGA ACTGATCCAG GGCGCCGCCG GCGAGATCAC GGCCGGCACG TTCGTGCGCC TGCGTGACCA GGGCTATGCC ACCGCACTGT CGGCACCGCT GGCCACCCGC ACCCTGGCGA TGAACACCGG CCGTGGTGCT ACCCGTGATC TGGCGGTACG CCAGGCGATC AACGAGGCGG TGGACAAGCA AGCCATCATC GACAAGATTC TCTACGGCCT TGAACCCCGG GCAGATACCC TGTTCGCCAG CAACATGCCC TACGCCGATA TCGGCCTCAA GCCCTACCCT TACGACCCGG CGCGCGCCGC CCATGCCCTT GATGCTGCCG GGTGGACGCT GGCCCCAGGC GCGTCTGTGC GCAGTAAAGG CGGCGAACCC TTGGCCATCG AGCTGGTATT CCTCGGCACA AGTGCCTTGC AGAAGAGCCT GGCCGAAGTG CTGCAGGGCG AGCTGGCGAA AATCGGCATC CACATCGACC TGCGTGCGGT TGAAGAAGGG GCTTTGGTGC GGCGCCAACG CGACGGCGAC TTCGGCATGA TCTTCGCCGA CACCTGGGGC GCGCCCTACG ACCCGCATTC GTTCGTCAGC TCCATGCGCT ACGCCGGCCA TGCCGACTAC ATGGCCCAAC GTGGGCTGGC AATCAAGGAC GAACTGGACA AGCGCATTGG CCAAGTGCTG GCCAGCACCG ACGAACAGCA GCGTGCCGAA CAGTACCGCT TCATCCTCAC CACCTTGCAC GAACAAGCCG TCTACCTGCC CATCTCGCAT CTCACGGCCA TCAGCGTGCG CCGAGACTCG GTGGCCAAGG TCCAGTTCGG CAGCACCTTG TTCGATGTGC CGTTCGAAAC CATGACGCCA AAACAGGGAG ACTGA
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Protein sequence | MKQQPGKRKP ALWGLLLLAA CAAAPASRAA EQGPQLVYSW PVNAGPLDPR GYSPNQMYAQ AMVYEPLVRY TAAGTLEPWL AEAWQVSDDG KTYTFTLRDG VRFSDGTPFD APAAKANLDA VLANTQRHRW MELVTTLDHV EAPERLTLRL VLKHPYYPTL MELAQVRPLR FASPQAKPGQ PAGTGPWMRA ESRLGEYDRF VRNPQYWGPK PAYGEVMVKV IPDPNSRALA LQAGEVELIQ GAAGEITAGT FVRLRDQGYA TALSAPLATR TLAMNTGRGA TRDLAVRQAI NEAVDKQAII DKILYGLEPR ADTLFASNMP YADIGLKPYP YDPARAAHAL DAAGWTLAPG ASVRSKGGEP LAIELVFLGT SALQKSLAEV LQGELAKIGI HIDLRAVEEG ALVRRQRDGD FGMIFADTWG APYDPHSFVS SMRYAGHADY MAQRGLAIKD ELDKRIGQVL ASTDEQQRAE QYRFILTTLH EQAVYLPISH LTAISVRRDS VAKVQFGSTL FDVPFETMTP KQGD
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