| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3319 |
|---|
| Symbol | |
|---|
| ID | 1046968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 3754557 |
|---|
| End bp | 3756758 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637146740 |
|---|
| Product | sensory box protein |
|---|
| Protein accession | NP_745462 |
|---|
| Protein GI | 26990037 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0669106 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCT CCTGCACGAG CTATCACAGC ATGGCGCTTT CCGAGTCTCA GCGCGACATA
CTCGGTATGA TTGCGACCAA TCATCAACTG CACGACATCC TCACCGCCAT CTGCTTGATG
ATCGACGCCC AGGATCCCGG CACACTGTGT TCGATACTGC TCACCGATGC GCAAGGCAAG
CATTTGCTGA AGGGCGCCGC GCCTGGCCTG CCGCCTGCCT ACAGCGATGC AATCCATGGC
TTGCCCATCG GGCCTCAGGA AGGTACGTGT GGCACAGCTG CATTCCGCCG CGAGCTGGTG
GTGACAGCGG ATATAGCCCG GGATCCGAGC TGGGAGCGTT TTCGCAGTCT GGCGCTAGGG
TACAATCTAC GCTCCTGCTG GTCGTTGCCA TTACTCTCGC ATGAGGGCTC CGTTCTTGGG
ACATTTGCGC TATACCAGGA TCAAGCGATT GCGCCAAGCG AGGTGCAGAT CCATCGGCTG
ACCTGCGCGG CGCAACTGGC TGCCATTGCG ATCCGGCATG AGCGTGACGG CCAACGTCTG
GAGGAAAGCG AACAACGGTT TCGCTCATTG TTTACCTACA ACCCCAACCC GGTTTTCGCC
CTTGACAGGG CGGGCAACAT CCAGAGTGTG AACCCAGCTG GCCTGAAGCT TAAAGCTGGC
GCGGCAACTG ATCTTGTCGG CCATCATTTC TCCCACCTCG TGTTCGAAGA AGACCTGCCG
AAAGTGAATC AGCATTTTTT CGCGGCCCGC GCCGGTGAGC CGCAGCGATT CGAGGCAAGG
GTGCGCGACG AGAGCGACGA CAAGCAGTTG ATCATGGATA TCGCTAACCT GCCAATCATG
GTCAATGGCG AGATCGTCGG GGTATTCGGC ATCGCGCGGG ATATCAGCAA ACAGAAGCAT
TACGAGCGCC AGTTGAGTAT CAATGCCAGC CATGACGGGC TGACGGGTTT GCTTAACCGC
CTGTCTCTGG AAGACCGGCT TGTCCAGGCG TGTCGCAGCA GCCGTCAACG TAAAGTTCAA
CTGGCGGTCA TGTACATCGA CCTGGATGGA TTCAAATCCA TCAACGACTC CATCGGGCAC
TACTTCGGCG ATCAAGTGCT GATCGAGGTG GCACAGCGCT TGACCCAGCA GGTCCGTCCG
GCTGATACCG TCGTGCGTAT GGGCGGCGAT GAGTTTGTCG TTCTGCTGAC GGACCTGCTT
CGTGACGAAG ACGCTGTCCC GGTGGCCGAG CGACTGCTGG CCAGCATTGG CAAACCCTAC
TGTATCCAGG GTATTGACCT GCACGTGAGT ACCAGTATCG GTATTACGGT AAGCGATGGT
CACATCGAGC AGCCGATGAA GTTGATCCAG CAGGCTGACA TGGCCATGTA CAAAGCCAAG
CAACAAGGTC GGAACAACTT TCAATGGTAC ACCAGCGATC TTAACCATCG CGTTTGCGAG
CACAGAAGCC TACGTAATGA CCTGCAAAAG GCTATCAAAA CTCAATCGTT CAGCCTGCAT
TATCAACCGC AAATAGAAGC GCGCACGCGT CGGGTGGTCG GGATCGAAGC GTTGTTGCGC
TGGGAGCATC CGGTTAGAGG GTTCATCTCT CCAGCGGTTT TCATACCGGT GGCAGAGGAC
AGTGGTCAAA TTATCCCTCT GAGCCTTTGG GTACTCGATA CGGCGTGCGC GCAGTTGCGC
GACCTATGTG ATCAGGGCTT CAACGGTATC TCGATGGCCG TAAATATTTC GCCGATGCAT
TTCCAGTGCG GTCAGTTCGT TGAATGTATC CAGGCAGTGT TGAGCAAGCA TGGGCTCAGC
GCTGGACAAT TGGAACTGGA GATAACCGAG TCACTCTTGC TGCATAACGT TGAACAAGCA
ATCGCAACCT TGCACCGCCT CAAAGACTTG GGTGTACGCA TTGCGCTGGA TGATTTCGGT
ACGGGGTTCT CCAGCCTGAG TTATCTCAAG TGCTTGCCAA TAGACAAAAT CAAGATTGAC
CGCTCCTTTA TCCAGGACAT CTCGACGAAC CCACACGATG CAGCAATCAC TCAAGGCATC
ATTTCGATGG CCCATCATCT CAGCCTGTCA GTGGTCGCTG AAGGTGTGGA AACTGCGCCT
CAGGTGAACT TCCTGGAAAG GGGGCGCTGC GATATTCTCC AAGGCTATTA CTTTGCGAGA
CCCATGTCGC ATGAGGCGCT CAGGACTTTC TTGGCCGACT AG
|
|---|
| Protein sequence | MNTSCTSYHS MALSESQRDI LGMIATNHQL HDILTAICLM IDAQDPGTLC SILLTDAQGK
HLLKGAAPGL PPAYSDAIHG LPIGPQEGTC GTAAFRRELV VTADIARDPS WERFRSLALG
YNLRSCWSLP LLSHEGSVLG TFALYQDQAI APSEVQIHRL TCAAQLAAIA IRHERDGQRL
EESEQRFRSL FTYNPNPVFA LDRAGNIQSV NPAGLKLKAG AATDLVGHHF SHLVFEEDLP
KVNQHFFAAR AGEPQRFEAR VRDESDDKQL IMDIANLPIM VNGEIVGVFG IARDISKQKH
YERQLSINAS HDGLTGLLNR LSLEDRLVQA CRSSRQRKVQ LAVMYIDLDG FKSINDSIGH
YFGDQVLIEV AQRLTQQVRP ADTVVRMGGD EFVVLLTDLL RDEDAVPVAE RLLASIGKPY
CIQGIDLHVS TSIGITVSDG HIEQPMKLIQ QADMAMYKAK QQGRNNFQWY TSDLNHRVCE
HRSLRNDLQK AIKTQSFSLH YQPQIEARTR RVVGIEALLR WEHPVRGFIS PAVFIPVAED
SGQIIPLSLW VLDTACAQLR DLCDQGFNGI SMAVNISPMH FQCGQFVECI QAVLSKHGLS
AGQLELEITE SLLLHNVEQA IATLHRLKDL GVRIALDDFG TGFSSLSYLK CLPIDKIKID
RSFIQDISTN PHDAAITQGI ISMAHHLSLS VVAEGVETAP QVNFLERGRC DILQGYYFAR
PMSHEALRTF LAD
|
|---|
| |