Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3280 |
Symbol | phaD |
ID | 1046928 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 3714632 |
End bp | 3715852 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637146701 |
Product | beta-ketoadipyl CoA thiolase |
Protein accession | NP_745423 |
Protein GI | 26989998 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0183] Acetyl-CoA acetyltransferase |
TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases [TIGR02430] beta-ketoadipyl CoA thiolase |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.939828 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGAAC CGACCCACGC CGATGCCTTG ATCATCGACG CCGTGCGCAC GCCCATTGGC CGCTATGCCG GGGCCCTGAG CAGCGTGCGC GCCGACGACC TGGCGGCCAT CCCGCTCAAA GCCTTGATCC AGCGTCACCC CGAACTGGAC TGGAAAGCCA TTGATGACGT TATCTTCGGC TGTGCCAACC AGGCTGGCGA AGACAACCGC AACGTGGCCC ACATGGCGAG CCTGCTGGCC GGGCTGCCAC TCGAAGTACC AGGGACCACG ATCAACCGCC TGTGCGGTTC CGGTCTGGAT GCCATCGGTA ATGCGGCACG TGCCCTGCGC TGCGGTGAAG CGGGGCTCAT GCTGGCCGGT GGTGTGGAGT CCATGTCGCG TGCACCGTTT GTGATGGGTA AGTCGGAGCA GGCATTCGGG CGTGCGGCCG AGCTGTTCGA CACCACCATC GGCTGGCGTT TCGTCAACCC GCTGATGAAG GCCGCCTACG GCATCGATTC GATGCCGGAA ACGGCTGAAA ACGTGGCCGA ACAGTTCGGC ATCTCGCGCG CCGACCAGGA TGCCTTTGCC CTGCGCAGCC AGCACAAAGC CGCAGCAGCT CAGGCCCGCG GCCGCCTGGC GCGGGAAATC GTGCCGGTCG AAATCCCGCA ACGCAAAGGC CCAGCCAAAG TGGTCGAGCA TGACGAGCAC CCGCGCGGCG ACACGACCCT GGAGCAGCTG GCTCGGCTCG GGACGCCGTT TCGTGAAGGC GGCAGCGTAA CGGCGGGTAA TGCCTCCGGC GTGAATGACG GCGCTTGCGC CCTGCTGCTG GCCAGCAGCG CCGCGGCCCG CCGCCATGGG TTGAAGGCCC GCGGCCGCAT CGTCGGCATG GCGGTGGCCG GGGTTGAGCC CAGGCTGATG GGCATTGGTC CGGTGCCTGC GACCCGCAAG GTGCTGGCGC TCACCGGCCT GGCACTGGCT GACCTGGATG TCATCGAACT CAATGAGGCC TTTGCCGCCC AAGGGCTGGC CGTGTTGCGC GAGCTGGGCC TGGCCGACGA CGACCCGCGA GTCAACCGCA ACGGCGGCGC CATCGCCCTG GGCCATCCCC TGGGCATGAG CGGTGCCCGG TTGGTGACCA CTGCCTTGCA CGAGCTTGAA GAAACGGCCG GCCGCTACGC CCTGTGCACC ATGTGCATCG GCGTAGGCCA AGGCATTGCC ATGATCATCG AGCGCCTCTG A
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Protein sequence | MNEPTHADAL IIDAVRTPIG RYAGALSSVR ADDLAAIPLK ALIQRHPELD WKAIDDVIFG CANQAGEDNR NVAHMASLLA GLPLEVPGTT INRLCGSGLD AIGNAARALR CGEAGLMLAG GVESMSRAPF VMGKSEQAFG RAAELFDTTI GWRFVNPLMK AAYGIDSMPE TAENVAEQFG ISRADQDAFA LRSQHKAAAA QARGRLAREI VPVEIPQRKG PAKVVEHDEH PRGDTTLEQL ARLGTPFREG GSVTAGNASG VNDGACALLL ASSAAARRHG LKARGRIVGM AVAGVEPRLM GIGPVPATRK VLALTGLALA DLDVIELNEA FAAQGLAVLR ELGLADDDPR VNRNGGAIAL GHPLGMSGAR LVTTALHELE ETAGRYALCT MCIGVGQGIA MIIERL
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