Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3228 |
Symbol | |
ID | 1046877 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 3664108 |
End bp | 3665073 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637146649 |
Product | periplasmic aliphatic sulfonate-binding protein, putative |
Protein accession | NP_745371 |
Protein GI | 26989946 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.579009 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCATCC GAACGAAGCT GCTGACCGTT GCCGTTGCCC TGCTGCTGGC CGGTCATGCC AGCGCCAGCG AGCGCCTGAC CCTGCGCATC GGCGACCAGA AGGGTAACAT GCGCGCCCAG CTGGAGGCCG CCGACGCCCT GCGCGACCTG CCCTACGACA TCCGCTGGGC CGAGTTCCCT GCCGCCGCGC CGCTGGCCGA GGCGCTCAAC GCTGGGGCGA TCGATGCCGG CATCATCGGC GATGCGCCAC TGCTGTTCGT GCTGGCCTCC GGAGCACCGG TCAAGGCCAT CGCAGTGGAC AAGTCCGACC CTTATGGCAC GGCGTTGCTG GTGCGGCCGG AGGCGCCGCT GCGCAGTGCG GCCGAACTCA AGGGCAAGCG CATCGCGACC GGGCGAGGGT CGATCGGGCA CCACCTGGCG CTCAAGGCGC TGGCCCAGGC AGGGCTGACC GAGAAGGATG TGGAGTTCCG TTTCCTTGGG CCGGTGGACG CCAAGATCGC CCTGGCCAAC GGCTCGGTGG ATGCCTGGTC GACCTGGGAG CCTTACACAG CGCTGGCCGA GTTGAGTGGG CAAGGCCGTG TGTTGGTCAA CGGTCGTGGC CTGTCCACCG GCAACAGTTT CCTTGCCGCC ACCGACAAGG CGTTGGAGGA GCCTGGGCGT CGTGCAGCGC TGCAGGACTA TCTCAACCGC CTGGCCGCAG CGCAGGTGTG GGCCAACCAA CACCTGGATA CCTACTCGAA AACCTTGGCC GCGATCATTG GCTTCCCGGT AGAGGCGGCC CGCCTGCAAT TCGAGCGTCG GCAGCTGCGC TGGCAGGTGA TCGACACGCA AACCGTGACC GAGCAGCAGG ACACCGCCGA CTTCTACCAC ACCCACGGCC TGATGACCGA GCGCCTTGAT GTGGCCCCGA CCTTTGCCAC CGGCTTCACC CTTCCCGCCG CCGCCAAGCT TGCAGCGCAA CCCTGA
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Protein sequence | MSIRTKLLTV AVALLLAGHA SASERLTLRI GDQKGNMRAQ LEAADALRDL PYDIRWAEFP AAAPLAEALN AGAIDAGIIG DAPLLFVLAS GAPVKAIAVD KSDPYGTALL VRPEAPLRSA AELKGKRIAT GRGSIGHHLA LKALAQAGLT EKDVEFRFLG PVDAKIALAN GSVDAWSTWE PYTALAELSG QGRVLVNGRG LSTGNSFLAA TDKALEEPGR RAALQDYLNR LAAAQVWANQ HLDTYSKTLA AIIGFPVEAA RLQFERRQLR WQVIDTQTVT EQQDTADFYH THGLMTERLD VAPTFATGFT LPAAAKLAAQ P
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