| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3121 |
|---|
| Symbol | |
|---|
| ID | 1046770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 3532274 |
|---|
| End bp | 3533179 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637146543 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | NP_745265 |
|---|
| Protein GI | 26989840 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.739955 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0893475 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTCA AACAACTGCG CGCCTTTGTC GCCGTGGCCA AGTACCAGAG CTTCGCCCAG
GCCGGTGAAC ACCTGCACGT TTCGCAACCG GCACTGAGCC TGACCATCAA GGCGCTGGAA
GAAAACCTCG GCGGCGCCCT GCTCAGCCGC ACCACGCGCA GCGTCAGCCT GACTGCCGAA
GGCGAAGTGC TGCTGCCACT GGCACGCCGC CTGCTGGCCG ACTGGGACGA CACCGAAGAG
ATGCTGCGCC AGCGCTTCAC CCTGCAATTG GGCCGTGTGT CGGTGGCAGC CATGCCGGCT
TTTGCCGGCA ACCTGTTGCC CCACTCGCTC AAGGTGTTTC GCCAGCGCTA CCCCAAGGTC
AACGTCACGG TGCACGACGT GATCAACGAA CAGGTACAGG AACTGGTACG CCATCGCCGC
GTCGAACTGG GCATCGGCTT CGAGCCGGAT AACATCGATG GGCTGGACTT CCACCCGTTG
TACATGGACC GCTTCGTTGC CGTAGTGGCC GCCGACTCGC CCTTGGCACT GCTGCCCCAG
GTCAGCTGGG CACAGCTGAT GGCCGAAGAT TTCGTGGCCC TGCAGCGCCC TTCGGCGGTG
CGCCTGCTGA TGGAGCAGAA TGTGGCGGCC CGCCACGGCA AGCTGGCAGT CGCGTTCGAA
AGCCACCAGC TGACGACCAT CGGCCGCATG GTGGCCAGCG GCCTGGGGGT CAGTGCCGTG
CCGGCCCTGT GCATCAACCA GATGCAGGAG CTGGGTGCCC GCTGCGTCAC CTTGGTCGAG
CCCACAGTCG AGCGGCGCAT CGGCGTGATT GCCCTCAGCG AGCACAAGCT TTCCACCGCA
GCACAAGCAC TGCTTGAAGT GCTTCTTTCC AATACCCGGA TCCCGGAGGT GACATGCGTT
ACGTAA
|
|---|
| Protein sequence | MNVKQLRAFV AVAKYQSFAQ AGEHLHVSQP ALSLTIKALE ENLGGALLSR TTRSVSLTAE
GEVLLPLARR LLADWDDTEE MLRQRFTLQL GRVSVAAMPA FAGNLLPHSL KVFRQRYPKV
NVTVHDVINE QVQELVRHRR VELGIGFEPD NIDGLDFHPL YMDRFVAVVA ADSPLALLPQ
VSWAQLMAED FVALQRPSAV RLLMEQNVAA RHGKLAVAFE SHQLTTIGRM VASGLGVSAV
PALCINQMQE LGARCVTLVE PTVERRIGVI ALSEHKLSTA AQALLEVLLS NTRIPEVTCV
T
|
|---|
| |