| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3090 |
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| Symbol | |
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| ID | 1043850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 3478720 |
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| End bp | 3481215 |
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| Gene Length | 2496 bp |
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| Protein Length | 831 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637146512 |
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| Product | OmpA domain-containing protein |
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| Protein accession | NP_745234 |
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| Protein GI | 26989809 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGC TCAAGTACTA CTGCCTGCGC TACCAACCCT ACCTGCTGGG CGTGGCGTTC
TTCCTGGCGA TCTTCCTGGT CTGGGCCATC GGCCGCGCCT TCGGCTTCGC CTCGCTGCAC
AGCCTGCTGG CCGGGATCGG TGTGTTTCTG CTGCTGTCGG CGGGCTATGT ACTGCTGCTG
TACCGCGGCG TGGGTCAGCA CCACAACCTT GAAGGCCTGC TGCGCGACGA CGCCGACCAG
GCCGTACTCA GTGCAGCCCC GGCCGACCGG GAAGAAGTCA GCCTGTTGCG CGAGCGCCTG
CTGCAGGGCA TCGAGCGCCT GCACAGCAAC AAGCCGCGCG GTACTTCGAA CAAGGATGCC
CTGTATGCCC TGCCCTGGTA CCTGGTCATT GGCCAGCCTG CCGCCGGCAA GAGCACGATG
ATACTGCAGT CGGGCCTGAA CTTCCCCTAT GCCGAGCGCG AAGGCGTGCG GGTCGCGGGC
CTGGGCGGCA CGCGCAACTG CGACTGGTTC TTCAGCTCTG AAGCGGTACT GCTGGACACT
GCCGGGCGTT ACATGAACAG CCCCGAGGAA GCCGGCAAGT GGCGCGGCTT TTTGCAACTG
CTGCGCCAGC ACCGCCAGCG CCGTCCCCTT AACGGCTTGA TCGTCAGCGT CAGCATCGCC
GATATTCTGC ATGGCTCGGT CGAAGACCAG GAGCGCGTGG CCAAGCGCCT GCGCGAACGC
ATTCAGGAAA GCTGCGCGCT GCTTGAAGTG CGCCTGCCAA TCTACCTGGT TTTCACCAAG
TGCGACCTGA TCCCTGGTTT CACCGCGTTC TATCGCCAGC TGGACGACGC CGCGCGTGGT
GAAGTGATGG GTAAAACCTT CTCTCACAAG GGGTACGAGC AAGCCGACTG GGGCCAACGC
TTCAGCAATG CGATGGACGA GCTGACGCGT TACTGGGGGC AGATGGCGAG CCAGCAGCTG
GTGCAGCAGG ACATACAAGT CACCCGGCGG AACGACGCTG CCTACCGCTT CCCGCTGGAG
CTGGCCGCGC TCAAGCCGCG CCTGCATCAG TTCGTCGACA GCCTGCTGCG TGCCAACCCT
TACCAGAATG CCGAAATGCT GCGCGGTTTC TATTTCACCG CGGCGCTGCA GGCCGACGAG
GCTCAGTGGG GCTGCCACGG CCAGCATGTG GCCGAACGCT TCGCGCTCGA ACACGCAGAA
GGTACGGGCA CTGCCGGCAG CCAGCCGGCG CCGCTGTTCA TCAACAGCCT GTTCCGCAAA
GTGATCATTC CCGACCAGCA TTTGGTGGCG CTGTACACCA GCAACCACCG TGAACGCCGG
CGCAAGGCCG GGTGGGTGGG CGCCGCCGGC CTGGCGGCAC TGGTGCTGTG CAGCCTGTGG
GGCTGGTCGT ACCTGAACAA CCGCGCCACC CTGGCCAGCA TTGCCGACGA ACTGGCCCAG
GCCAAGGCCG ACGACCAGGC GGCCAGCGGC CAGTACACCG CCTGGCGAAG CCTCGACCGC
TTGCGCTTCT GGGCTGCTCA CTACCATGAG CAACACCACG CTAAGGGCGT GCCCCTCGGC
ATGCGCCTGG GCCTGTACCA GGGCCATGAG GTCGAGCCGC TGCTGCGCGA CCGCTACTTC
GCCACGTTGC AGAACGTGAT GCTAAAGCCC ACGGCCGATA ATCTGACCCG CACCCTGTAC
CTGCTGACCA CGCTCAAGGT CTACCAGCGC AACACCCGTG AGCTGCAGCC AGTGAGCGGC
ATTGACAGCG TAGAGGCCGA GGCGCTGCCC CATGACAACC GCGCCCAGTC GATCGCCAAT
TTCGGAAAGG CGGCCCTGGA CACTTACGTG ATGCTTTCTC CGGGCCAGCG CGAGCATGCC
GACCCGGCGT TTCTCAAGGC GCACCTGCCG GACTACTGGT ACCCGGCCAT CGCCCGCCAG
ACCGGCAAGA GCATGGCCGC CGCTGGCAGC GAGGCCGGTG GCAACCAGGA CTACCTGTAT
GCCAGCCGCC AGATCACGTT CTATAGCGAC CAGATCCGTG AGCCAGATGT ACCGCGCATC
CTCGACAACG CCTTCCTGAT GTCCAGTTCG CGCAACTACA TCGACAGCCT GCGGGCCCAG
TCACTGCGTG CGATCGAGAC CATCACGCTG GAATCCGACA CCCTGTTCGC CTTCGGCCGC
GCCGATTTCC AGAGCCTGAA AAACGAAGGC CAGCATCAGC TGAGCGCAAT TGCCAGCAAG
CTGCTGAACA CCCCGAATAT CGGCAAGATC ATCATCTCGG GGCACGCCGA CCAACTGGGT
GACAGCCAGG GCAACCTGCA GGTTTCGAAA CAACGGGCGC AAACCATCCG CACCTATCTG
GTTGGCAAGG GCGTACCTGC CGAGCTGGTG GTCGCGCAGG GCGAAGGCAG CCGCAAGCCA
TTGGTCAACT GCGACATGCA ACAACCGCGA ACGCAGTTGA TCAAGTGCCT GGAGCCCAAC
CGCCGGGTGG AAATCGAAGT GCGTGGGCTT AACTGA
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| Protein sequence | MNKLKYYCLR YQPYLLGVAF FLAIFLVWAI GRAFGFASLH SLLAGIGVFL LLSAGYVLLL
YRGVGQHHNL EGLLRDDADQ AVLSAAPADR EEVSLLRERL LQGIERLHSN KPRGTSNKDA
LYALPWYLVI GQPAAGKSTM ILQSGLNFPY AEREGVRVAG LGGTRNCDWF FSSEAVLLDT
AGRYMNSPEE AGKWRGFLQL LRQHRQRRPL NGLIVSVSIA DILHGSVEDQ ERVAKRLRER
IQESCALLEV RLPIYLVFTK CDLIPGFTAF YRQLDDAARG EVMGKTFSHK GYEQADWGQR
FSNAMDELTR YWGQMASQQL VQQDIQVTRR NDAAYRFPLE LAALKPRLHQ FVDSLLRANP
YQNAEMLRGF YFTAALQADE AQWGCHGQHV AERFALEHAE GTGTAGSQPA PLFINSLFRK
VIIPDQHLVA LYTSNHRERR RKAGWVGAAG LAALVLCSLW GWSYLNNRAT LASIADELAQ
AKADDQAASG QYTAWRSLDR LRFWAAHYHE QHHAKGVPLG MRLGLYQGHE VEPLLRDRYF
ATLQNVMLKP TADNLTRTLY LLTTLKVYQR NTRELQPVSG IDSVEAEALP HDNRAQSIAN
FGKAALDTYV MLSPGQREHA DPAFLKAHLP DYWYPAIARQ TGKSMAAAGS EAGGNQDYLY
ASRQITFYSD QIREPDVPRI LDNAFLMSSS RNYIDSLRAQ SLRAIETITL ESDTLFAFGR
ADFQSLKNEG QHQLSAIASK LLNTPNIGKI IISGHADQLG DSQGNLQVSK QRAQTIRTYL
VGKGVPAELV VAQGEGSRKP LVNCDMQQPR TQLIKCLEPN RRVEIEVRGL N
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