Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1993 |
Symbol | |
ID | 1043026 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 2259410 |
End bp | 2262145 |
Gene Length | 2736 bp |
Protein Length | 911 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637145404 |
Product | peptidoglycan-binding LysM |
Protein accession | NP_744144 |
Protein GI | 26988719 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3170] Tfp pilus assembly protein FimV |
TIGRFAM ID | [TIGR03504] FimV C-terminal domain [TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.650593 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.139886 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTCGAA TTCGCAAACT GGTTCTGGCC ATGGCTGCAG CATCCGCGCT GTCGTCTGGC ATGGCGAATG CGCTGGGCCT GGGGGAGCTG ACCCTGAAGT CGGCACAGAA TCAGCCGCTG GACGCCGAGA TCGAATTGCT CGACGTGCGC GACCTCAAAG CCGCCGAAGT GGCGCCGAGC CTGGCGCCAC CGGAAGAGTT CAGCAAGGCC GGGGTGGCGT TTCCGACCTA CCTCGAAGAC CTGACCTTCA CACCGGTGAT CAACCCCAAC GGCAAAAGTG TGCTGCGCGT GACCTCCAGT CAGCCGCTGC CAGGTCCGGT GGTCAAGTTC CTGGTGCAGG TGATGTGGCC GCAGGGCCGC CTGCTGCGTG ACTATAGCGT GCTGCTCGAC CAGGCCAAGG CACAGGGCGA ACAGCCGGCG GCAGGCAATG TCACACCGGC CATCACCGGT GCCAGCAGCT ACACCACCCA GCGTCGCGAC ACCTTGTGGC AGATTGCCGC GCGTAACACC CAGGGTGGAT CGATCCAGCA GACCATGATC GCGATCCAGG CTTTGAACCC GGATGCCTTC ATCGGCAACA ACATCAACCA GCTGAAGGTT GGCCAGGTAC TGCGCCTGCC CGACCAGCAG CAGATCCAGA GCATCGCCCA GGGCGAGGCG AACCGCGAGG TGGCCGAGCA GTATGCGGCC TGGCGTGAAG GCCGTCGCCT GGGACCGCGT GCCCGCCAGC TGGATGCCAC TCGCCGTGGC GCCGCCGAGG CTGCACCGTC GCGTATCGCC CAGGGCGACA ACCTGCGCCT GGTCAGCCCG GGCAACCAGG CCGGTGCAGG CCAGGCCAAG GCGTTGAATG ACGAGCTGGC CATGGCCCAG GAAAGCCTGG ACACCAGCCG TCGCGACAAC GAAGAACTGA AAAGCCGCAT GGCCGACCTG CAGAGCCAGC TGGACAAGCT GCAGCGCCTG ATCGAGCTGA AGAACAACCA GTTGGCACGC CTGGAAGGCC AGGGCGCAGC CGCGTCGGCA GCGGCTGCCG ATACCCCGGA GCAGCCCGTG GTCAATCCGG CACCTGCTGC TGCCGATACC GCACCCCAGC CTGTGCCGGA CACCCAGCCA GCACCCGCCA GCCAGCCGAA GGGGGCGCTC GACTCGGTCC TGGGCAACCC GTGGCTTCTG GGCGTGATTG CCGGTTCCAG CATCCTGGTG CTGGCACTGC TGCTGTGGCT GCTGGCGCGC AAACGCAAGG CCCAGCAAGA AGCCGAGAAG CACCTGCGCA TGGCGCGGGC GCTGGAAGAA GAGCAGGGCG CAGGTTTCGA CAGCGATATC GAGAGCTTCG GCGGCGTCGA AGCCCCCGAG CCGGGTGTAA CCCTGTCGCC GGCTGTGGTT GCCGCTTCGG CTGCAGCTGC CGTCGCTGCG GAAAAAGTGG CAGAACCGGT CGCCGAGGCA GCACCCGAGC CTGAACCACA AGCAGACCCG CACGCCGCGC TGCTGGCGCA AGTCGACCAA TGCCTGGCCG AAGGCCGCCT TAATCGTGCC ACCGAGCTGC TGGAGCCCGC CGTGGCCGCC GCACCGGAGC GTGACGACCT GCGCCTGAAA CTGATGGACG TGTACGCCCG CCAGGGTGAC CAGAGCGCGT TCGCCGAACA GGAGCGTCAG TTGCCGGCCA GCGAGCAGAA CGTTGCTGAA GTCGCCGGCC TGAAAGAGCG TTACCCCGCC ATGCTCGGCC TGGCCGCTGC CGGCCTGGGT GCGGCGGCGC TGGCTGCCGA AATGGATGAG CAGTACGTGC AAGAGCTGCT GCACGATGAG CCCAAAGCGC CAGTGGTTGC CGATGTGGTG CCTGACGAGT TGTCCGGGTT CGAGCCGCAA GAGCAGGCTG AGCCAGAGGT TGTCGCGCAA GCAGCGCCTG ACGCTGAGCT GGACGCCTTC GATGATGTGC CAACGCTCGA TGCAACGGAC CTGGCCGAGC AGGATCTGGA CAGCGCCTTC GACCTGAGCC TGGGTGAAGA CCTGGCCGAT CAAGACCCGC TGGCCGCGTC CGTGCTGGAC GAGCCGATGG CGCAGGGGGG CGTACCCGAC GAACTGATAA TCGCTGAGCC TGTGCTCGAT GAGCCCGTAC AGGAAGAAGC TCAGCCGGAA GAACAGCCCT TTGCCGTGGA TGCCGAGCTG CAAGCCGACG CCGACGCCGA TTTCGAGGCC ATGCTGGCTC AGGCCGAGCC TCAGCCTGCC GTGGACCTGT CTGATTTCGA CCTCGACGTC AGCGAGCCGG TTGCCCCGGC TGCCCCTGAG GCGCTGGAGC AAGATCCGCT GGATGTCACC GCCGAACTGG CTGCCTTCGA CAGCGAACCG GAGTTTGATC CGGTCTCCGA GTTCGACTTG CCATCGGACT TCGACCTGTC CCTGTCGTTG GAAGACGATT CGCCAGCCGC CAAGAGCTTT GCCTCGGAGC TCAATGACGT CAACGCCGAG CTGGACAAGC TGTCGCAGAG CCTCGAAACG CCATCGCTGG AGCCGCACTT CACCAGCGAA GACGCGGTGG CGCAACCAGA GCCTGAGCCT TTGGACGACC TGGACTTCGA CTTCTTCTCC GGCAGTGACG AAGTCGCCAC CAAGCTCGAC CTGGCCCGTG CCTATATCGA CATGGGTGAC AGCCAGGGCG CGCGCGACAT CCTCGACGAA GTGGTCAAGG ATGGCGACGA CAGCCAGCGT CAGGAAGCCG AGGACATGCT CTCCCGGCTG GTCTGA
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Protein sequence | MLRIRKLVLA MAAASALSSG MANALGLGEL TLKSAQNQPL DAEIELLDVR DLKAAEVAPS LAPPEEFSKA GVAFPTYLED LTFTPVINPN GKSVLRVTSS QPLPGPVVKF LVQVMWPQGR LLRDYSVLLD QAKAQGEQPA AGNVTPAITG ASSYTTQRRD TLWQIAARNT QGGSIQQTMI AIQALNPDAF IGNNINQLKV GQVLRLPDQQ QIQSIAQGEA NREVAEQYAA WREGRRLGPR ARQLDATRRG AAEAAPSRIA QGDNLRLVSP GNQAGAGQAK ALNDELAMAQ ESLDTSRRDN EELKSRMADL QSQLDKLQRL IELKNNQLAR LEGQGAAASA AAADTPEQPV VNPAPAAADT APQPVPDTQP APASQPKGAL DSVLGNPWLL GVIAGSSILV LALLLWLLAR KRKAQQEAEK HLRMARALEE EQGAGFDSDI ESFGGVEAPE PGVTLSPAVV AASAAAAVAA EKVAEPVAEA APEPEPQADP HAALLAQVDQ CLAEGRLNRA TELLEPAVAA APERDDLRLK LMDVYARQGD QSAFAEQERQ LPASEQNVAE VAGLKERYPA MLGLAAAGLG AAALAAEMDE QYVQELLHDE PKAPVVADVV PDELSGFEPQ EQAEPEVVAQ AAPDAELDAF DDVPTLDATD LAEQDLDSAF DLSLGEDLAD QDPLAASVLD EPMAQGGVPD ELIIAEPVLD EPVQEEAQPE EQPFAVDAEL QADADADFEA MLAQAEPQPA VDLSDFDLDV SEPVAPAAPE ALEQDPLDVT AELAAFDSEP EFDPVSEFDL PSDFDLSLSL EDDSPAAKSF ASELNDVNAE LDKLSQSLET PSLEPHFTSE DAVAQPEPEP LDDLDFDFFS GSDEVATKLD LARAYIDMGD SQGARDILDE VVKDGDDSQR QEAEDMLSRL V
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