| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1983 |
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| Symbol | |
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| ID | 1043046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 2246299 |
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| End bp | 2249709 |
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| Gene Length | 3411 bp |
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| Protein Length | 1136 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637145394 |
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| Product | sensory box protein |
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| Protein accession | NP_744134 |
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| Protein GI | 26988709 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0811196 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCCAG GGCATTCATG GCCCTGCTCG ACAGCCACTC AGGGCCCACC TGACCGGCTG
TCAGCCAGCT ATTCGTATTC CAAGGACACG TCATACGCCA CAGGTCTGGT ACCAATGCCC
AAATCAGCAA ACCGCTTTTT GCGCCTGCCG CGAATACCCG CAGCTGATCC CCAGGAGTCC
GAGCAGGCCT GGCAGAACGC CCCGCAACTG CTGGCAGCGC TCAACGGTGC GCACCTGGGT
GCCTGGCTAT GGGATATCGA AAGCGGCAGG GTTAGTTGGT CGCGGGGCAC CCAGGCCCTG
TTCGGTTTCG ATCCACAGCG GCCACTGCCC GCCGATATCG ATTACCTCGA CCTGCTGCCC
GAGGAGGATC GCGCCCGCAC GCGCCAGGTG TTCCAGGCGG TGGTCAATGG CGAGCCGGTG
GAGCAAGCCA TGCGCCACCG TATCCGCTGG CCGGACGGCA GCCTGCACTG GCTGGAGATC
AACGGCAGCC TGACCCACGA CCCGCACGGC CGACCGCAGA TGATCGGCGT GATCCGCGAG
ATCACCCGCC AGCGCGAACG GGAAACGGCG CTGATCAATT CGGAAAAGCG CTTCGCCACG
CTGTTTCACC TGAGCCCCAA CGCCATTTTG CTGACCCGCC GCCGCGATGG CATGATCTTC
GAGGTCAACC AGCACTTCGA AGACATGTTC GGCTGGCCCG GCAGCCAGGT GATCGGCAAG
ACCAGCCTGG AACTGGGCCT GTGGGTCAAC CCCGAACAGC GCCACCAGAT AGTGGAGTCG
ACCCGTGCCA ACGGCGGCCC GCTGATCATG GAGGTGCAAT TCCGCGCAAC CAGCGGCAAG
GTGCATGACG GCATCCTGTG CACCCAGGGC ATCGAGCTGG AAGGCGTGAC TTTCCTGATC
AGTACATTCG TCGACACCAC CGAACGCAAG CGTGCCGAGC AGGCCCTGAA GGACAGCCAG
GAGCGCCTGG ACCTGGCCCT GGACTCGGCG CAACTTGGCA CCTGGGACTG GCACATCCCA
AGCGGCATGC TCTACGGCTC GGCCCGCGCC GCGCAGCTGC ATGGCTTGCC GCCCATCCCC
TTTCATGAAT CGTTCGATGC GTTCTTCGAG GGCGTGCCGG AGCACGAGCG CAACTCGATG
CGACAAGCCT ACCGTAGCCT GCGCGAAGGG CCCGCCGGCA ACTATCAGAT CACCTACCGG
GTGCAGCTGG AAAACGGCAC TTCACGCTAC ATCGAAAGCC GCGCGCGGCT GTACCGCGAC
GACCAGGGCA TCCCCCTGCG CATGGCGGGC ACCTTGCTCG ACATCACCGA TCAGGTGGAG
CGCGAACAAC GCCTGAGCGC CTCGGAAGAG AAGTTTGCCA GCCTGTTCCA GGTCAGCCCC
GACCCGATCT GCGTCACACG CCAGGACACT GGCCAGTTCA TCGAGATCAA TCCGGCGTTC
ACCCAGACCT TCGGCTGGAG CAGCGCGCAG GTGCTTGGGC GTACCGCCGA GGAAATCGGC
CTGTGGGCCG AGTCCGTCGA GCGCGCGAAA CGTATCGAGC AGGTGATCCG CGAACAGGCC
TTGAGTAACG TCGCCGTGGT ACTCAACCAC CGCAATGGCG ACCCGCTGAC CTGTGTGATT
TCCAGCCGCC TGATCACCGT CGACGACCAG CCCTGCAGCG TGACCACCCT GCGCGACATC
ACCCAGCAAC AACGCGCCGA AGCCGCGCTG AAGTCCAGCG AGGAGAAGTT CGCCAAGGCC
TTCCACTCCA GCCCCGACGC CATCACCATC ACCGAACGCC ACAGCGGCCG CTACCTGGAG
GTCAACGACG GCTTCTGCCG CCTGACCGGC TACAGCACTG ATGAAGTGAT CGGCCACACG
GTGTATGAGA TCGGCATCTG GGCCGACGAC AAGCAGCGCA GCGCGCTGCT GGCCGAGTTG
CGCGAGCGCG GCCGGGTACA CCACCGCGAG ATGCTCGGGC GCAACAAGCG TGGCGATATC
CTCACGGTCG AGGTTTCGGT GGAACCGATC ACCCTCAACG AAGTGGATTG CCTGCTGCTG
ACCGCCCGCG ACGTCAGCCA GCTGAAGAAC GCCCAGGCGC AGATACGCCA CCTGGCCTAT
CACGACCCGC TGACCAACCT GCCCAACCGC GCCTTGCTGA TGGACCGCCT GAGCCAGCAG
ATCGCCCTGC TCAAGCGCCA TAACCTGCGT GGCGCCCTGC TGTTCCTCGA CCTCGACCAC
TTCAAGCACA TCAACGACTC GCTGGGCCAC CCGGTGGGCG ACACCGTGCT GAAGATCATC
ACCGCCCGCC TTGAGGCCAG CGTGCGCCTG GAGGACACCG TGGCGCGTCT GGGGGGCGAC
GAATTCGTGG TGCTGCTTAG CGGCCTGGAA GGGAGCCGCG AACACGTTGA AGAGAAAGTG
CGCGAGCTGG CCGACACCCT GCGCGAACTG CTGGCCGAGC CAATGTCACT GGATGGCCAG
CGCCTGCAGG TAACGCCCAG CATCGGCGTG GCGCTGATCC CCGACCACGG CACCACACCG
GCCGACCTGC TCAAACGTGC CGATATCGCC CTGTACCGGG CCAAGGACTC CGGTCGCAAC
ACCACCCAGC TGTTTCACAC CACCATGCAG AAGGCCGCCA GCGAGCGCCT GCGCATGGAA
AACGACCTGC GCCTGGCCCT GGCCCGTGGC GAGCTGGCAC TGCACTTCCA GCCGCAGGTG
GATGCCCGCG ACAACCGCAT CGTCGGTGCC GAAGTACTGT TGCGCTGGCA CCACCCGCAA
CTGGGTCAGC AACCGCCCTC GCAGTTCATC CAGGTACTGG AAGAAAGTGG CCTGATCCTT
GAAGTTGGCA GCTGGATTCT CGACGAAGCC TGCGACGCCT GCGCCCGCAT GCTGACCGAC
GGGCTGATCG ACGCTGATGA TTTCAACCTG TGCGTGAACA TAAGCCCGCG ACAGTTCCGC
CAGAACGACT TTGTCGGGCG GGTGCTGCGC AGCCTGGACG ATTACCGCCT GCCGCGGCAG
ATGCTGACGC TGGAAATCAC AGAAGGCATC GTCATACAGA ACCTGGAAGA CACCATCAGC
AAGATGTGCG AGCTGAAGCG CTACGGGGTG AGTTTTGCCA TGGATGACTT CGGCACCGGC
TATTCCTCGC TGACTTACCT GAAGCGCCTG CCGGTCGATG CGCTGAAGAT CGACCAGAGC
TTCGTACGCG ATGCTCCGGT CGACCCCAAC GACGCAGAAA TTGTCCGCGC CATTGTCGCC
ATGGCGCGCA GCCTGGACCT GGCGGTGATT GCCGAAGGGG TAGAACTGAC CGAACAGCTG
GCGTTTCTCG AGCGGCTGGG GTGCCATCTG TACCAGGGTT ATCTGCACAG CCGGCCATTA
CCGTTACCGG AGTTTCGGCA GATGTTGCTG GAGGCGCCGG CAGATTACTG A
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| Protein sequence | MRPGHSWPCS TATQGPPDRL SASYSYSKDT SYATGLVPMP KSANRFLRLP RIPAADPQES
EQAWQNAPQL LAALNGAHLG AWLWDIESGR VSWSRGTQAL FGFDPQRPLP ADIDYLDLLP
EEDRARTRQV FQAVVNGEPV EQAMRHRIRW PDGSLHWLEI NGSLTHDPHG RPQMIGVIRE
ITRQRERETA LINSEKRFAT LFHLSPNAIL LTRRRDGMIF EVNQHFEDMF GWPGSQVIGK
TSLELGLWVN PEQRHQIVES TRANGGPLIM EVQFRATSGK VHDGILCTQG IELEGVTFLI
STFVDTTERK RAEQALKDSQ ERLDLALDSA QLGTWDWHIP SGMLYGSARA AQLHGLPPIP
FHESFDAFFE GVPEHERNSM RQAYRSLREG PAGNYQITYR VQLENGTSRY IESRARLYRD
DQGIPLRMAG TLLDITDQVE REQRLSASEE KFASLFQVSP DPICVTRQDT GQFIEINPAF
TQTFGWSSAQ VLGRTAEEIG LWAESVERAK RIEQVIREQA LSNVAVVLNH RNGDPLTCVI
SSRLITVDDQ PCSVTTLRDI TQQQRAEAAL KSSEEKFAKA FHSSPDAITI TERHSGRYLE
VNDGFCRLTG YSTDEVIGHT VYEIGIWADD KQRSALLAEL RERGRVHHRE MLGRNKRGDI
LTVEVSVEPI TLNEVDCLLL TARDVSQLKN AQAQIRHLAY HDPLTNLPNR ALLMDRLSQQ
IALLKRHNLR GALLFLDLDH FKHINDSLGH PVGDTVLKII TARLEASVRL EDTVARLGGD
EFVVLLSGLE GSREHVEEKV RELADTLREL LAEPMSLDGQ RLQVTPSIGV ALIPDHGTTP
ADLLKRADIA LYRAKDSGRN TTQLFHTTMQ KAASERLRME NDLRLALARG ELALHFQPQV
DARDNRIVGA EVLLRWHHPQ LGQQPPSQFI QVLEESGLIL EVGSWILDEA CDACARMLTD
GLIDADDFNL CVNISPRQFR QNDFVGRVLR SLDDYRLPRQ MLTLEITEGI VIQNLEDTIS
KMCELKRYGV SFAMDDFGTG YSSLTYLKRL PVDALKIDQS FVRDAPVDPN DAEIVRAIVA
MARSLDLAVI AEGVELTEQL AFLERLGCHL YQGYLHSRPL PLPEFRQMLL EAPADY
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