Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1953 |
Symbol | |
ID | 1043099 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 2209753 |
End bp | 2210562 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637145358 |
Product | short chain dehydrogenase/reductase family oxidoreductase |
Protein accession | NP_744105 |
Protein GI | 26988680 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.660502 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000443121 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCTTTTC AAAACAAAAT CGTTGTGCTC ACAGGCGCAG CTTCTGGCAT CGGCAAAGCG ACAGCACAGC TGCTAGTGGA GCAGGGCGCC CATGTGGTTG CCATGGATCT TAAAAGCGAC TTGCTTCAAC AAGCATTCGG CAGTGAGGAG CACGTTCTGT GCATCCCTAC CGACGTCAGC GATAGCGAAG CCGTGCGAGC CGCCTTCCAG GCAGTGGACG CGAAATTTGG CCGTGTCGAC GTGATTATTA ACGCCGCGGG CATCAACGCA CCTACGCGAG AAGCCAACCA GAAAATGGTT GATGCCAACG TCGCTGCCCT CGATGCCATG AAGAGCGGGC GGGCGCCCAC TTTCGACTTC CTGGCCGATA CCTCGGATCA GGATTTCCGG CGCGTAATGG AAGTCAATTT GTTCAGCCAG TTTTACTGCA TTCGAGAGGG TGTTCCGCTG ATGCGCCGAG CGGGTGGCGG CAGCATCGTC AACATCTCCA GCGTGGCAGC GCTCCTGGGC GTGGCAATGC CACTTTACTA CCCCGCCTCC AAGGCGGCGG TGCTGGGCCT CACCCGTGCA GCGGCAGCTG AGTTGGCACC TTACAACATT CGTGTGAATG CCATCGCTCC AGGCTCTGTC GACACACCAT TGATGCATGA GCAACCACCG GAAGTCGTTC AGTTCCTGGT CAGCATGCAA CCCATCAAGC GGCTGGCCCA ACCCGAGGAG CTTGCCCAAA GCATCCTGTT CCTTGCCGGT GAGCATTCGT CCTTCATCAC CGGACAGACG CTTTCTCCCA ACGGCGGGAT GCACATGTAA
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Protein sequence | MSFQNKIVVL TGAASGIGKA TAQLLVEQGA HVVAMDLKSD LLQQAFGSEE HVLCIPTDVS DSEAVRAAFQ AVDAKFGRVD VIINAAGINA PTREANQKMV DANVAALDAM KSGRAPTFDF LADTSDQDFR RVMEVNLFSQ FYCIREGVPL MRRAGGGSIV NISSVAALLG VAMPLYYPAS KAAVLGLTRA AAAELAPYNI RVNAIAPGSV DTPLMHEQPP EVVQFLVSMQ PIKRLAQPEE LAQSILFLAG EHSSFITGQT LSPNGGMHM
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