| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1946 |
|---|
| Symbol | |
|---|
| ID | 1043114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 2201352 |
|---|
| End bp | 2202140 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637145351 |
|---|
| Product | short chain dehydrogenase/reductase family oxidoreductase |
|---|
| Protein accession | NP_744098 |
|---|
| Protein GI | 26988673 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000538802 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGACAGTCA ATTATGATTT TTCCGGAAAA GTCGTGCTGG TTACCGGCGC TGGCTCTGGT
ATTGGCCGTG CCACTGCGCT TGCCTTCGCG CAGTCGGGCG CATCCGTTGC GGTCGCAGAC
ATCTCGACTG ACCACGGTTT GAAAACCGTA GAGTTGGTCA AAGCCGAAGG AGGCGAGGCG
ACCTTCTTCC ATGTCGATGT AGGCTCTGAA CCCAGCGTCC AGTCGATGCT GGCTGGTGTC
GTGGCGCATT ACGGCGGCCT GGACATTGCG CACAACAACG CCGGCATTGA GGCCAATATC
GTGCCGCTGG CCGAGCTGGA CTCCGACAAC TGGCGTCGTG TCATCGATGT GAACCTTTCC
TCGGTGTTCT ATTGCCTGAA AGGTGAAATC CCTCTGATGC TGAAAAGGGG CGGCGGCGCC
ATTGTGAATA CCGCATCGGC CTCCGGGCTG ATTGGCGGCT ATCGCCTTTC CGGGTATACC
GCCACGAAGC ACGGCGTAGT GGGGCTGACT AAGGCTGCTG CTATCGATTA TGCAAACCAG
AATATCCGGA TTAATGCCGT GTGCCCTGGT CCAGTTGACT CCCCATTCCT GGCTGACATG
CCGCAACCCA TGCGCGATCG ACTTCTCTTT GGCACTCCAA TTGGACGATT GGCCACCGCA
GAGGAGATCG CGCGTTCGGT TCTGTGGCTG TGTTCTGACG ATGCAAAATA CGTGGTGGGC
CATTCGATGT CAGTCGACGG TGGCGTGGCA GTGACTGCGG TTGGTACTCG AATGGATGAT
CTCTTTTAA
|
|---|
| Protein sequence | MTVNYDFSGK VVLVTGAGSG IGRATALAFA QSGASVAVAD ISTDHGLKTV ELVKAEGGEA
TFFHVDVGSE PSVQSMLAGV VAHYGGLDIA HNNAGIEANI VPLAELDSDN WRRVIDVNLS
SVFYCLKGEI PLMLKRGGGA IVNTASASGL IGGYRLSGYT ATKHGVVGLT KAAAIDYANQ
NIRINAVCPG PVDSPFLADM PQPMRDRLLF GTPIGRLATA EEIARSVLWL CSDDAKYVVG
HSMSVDGGVA VTAVGTRMDD LF
|
|---|
| |