| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1805 |
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| Symbol | wbpM |
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| ID | 1043297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 2028258 |
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| End bp | 2030324 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637145207 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | NP_743960 |
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| Protein GI | 26988535 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.287116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.196663 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGGCGCC ATGCTCCGGT TGTTCAATCG AGGTCCTTTT GCGGTGAGGA GAGCCGAATG
AGCGACGCAA AGAACAGCAG GGTGCGTGAG TACCTAGTTA ACTTGTCCAG GCGGAAAAAG
CGTCTTGTGC AAGTGTGCGC CGACGTGGTG CTGATCTGGT TGGCGTTATG GTTGTCTTTT
ATCGTGCGCC TGGGCATCGA TGAAATGTAC AACCCGGTCA TCAAACACGC CTGGTTGTTC
ATGGTTGCGC CTCTCGTAGC CATTCCGCTG TTCATTCGTT TTGGCATGTA CCGGGCGGTG
ATGCGCTACT TCGGCAATGA TGCATTGGTG ACCATTATCA AGGCCGTTAC CCTGTCATCG
CTCATTCTGG CTGTGGTTGT GTACTGGTAC AGCAACCATC AGGTAATCGT GCCGCGCTCG
ATCATTTTCA ACTATTGGTG GTTGAGCATG GTCATCATTG GTGGTTTACG CCTGATCATG
CGCCAGTATT TCCTGGGTGA CTGGTTTACC GGCGCCCATC AGATACCGTT CGCCAACCGC
GATGATGGCC TGGTCAAGGT AGCCATCTAT GGTGCAGGCA CCGCCGGCAA CCAGCTGCTG
GCAGCGTTGC GCATGGGGCG GGCGATGCGC CCGGTGGCGT TCATTGATGA TGACAGTGAC
CTTGCCAACC GGGTCATTTC CGGTTTGCAG GTGTACAAGC CCAAGCATCT GCAGCAGATG
ATCAAGGAAA CCGGTGCACA GGAAATCCTC CTCGCCCTGC CTTCGGTATC GCGCGCCCGG
CGCAAGGAGA TTCTCGCCTT GCTCGAACCT TACCCGTTGC ACGTGCGCAG CGTGCCGGCC
TTTGCCGACC TGGCAAGTGG CCGGGTCAAA GTGGATGACA TCCAAGACGT GGACATTGCC
GATTTGCTTG GGCGTGACCC GGTACCCGCC AAGGAAGGGC TGCTCGAACG CTGCATCCAC
AAGCAAACGG TACTGGTCAC CGGGGCCGGT GGCTCCATCG GCTCCGAGCT TTGCCGCCAG
ATCATAGGGC TTGGGCCAAC GACATTGCTG CTGTTCGACC ACAGCGAGTA CAACCTCTAC
GCTATCCTCA GTGAGCTGGA GCAACGCGTT GCGCGCGAGT CGCTGCCGGT GCGACTGCTG
CCCATTCTGG GGTCGGTACG CAATCAGCAG CATCTTGCCC ACGTTATGTC CACTTGGCGG
GTAGCCACCG TCTACCACGC GGCGGCTTAC AAACATGTGC CCATGGTTGA GCACAACATG
GCGGAGGGTA TACTCAACAA TGTGTTCGGC ACGCTTTGTA CCGCACAGGC TGCTTTGCAA
TCAGGCGTTG CCAACTTCGT GCTTATCTCG ACTGACAAGG CGGTGCGCCC CACGAACGTG
ATGGGCGGTA CCAAGCGTCT TTCCGAGTTG ATTCTGCAAG CACTAAGCCG CGAGGCGGCA
CCCGTCATGT ACGGTGACAG CAGCAAGATC GCCCGGGTGA ACAAAACCCG CTTCACCATG
GTGCGCTTTG GCAATGTGCT GGGCTCCTCT GGCTCGGTGA TCCCGTTGTT CCACAAGCAG
ATCAAGGCCG GTGGCCCAAT TACGGTTACC CACCCGAAGA TTACCCGCTA TTTCATGACT
ATCCCCGAAG CCGCTCAACT GGTGGTTCAG GCAGGGGCGA TGGGGCAGGG CGGGGACGTA
TTTGTTCTCG ACATGGGGGA GCCGGTAAAA ATTGTTGAGC TGGCTGAGAA AATGATTCAT
CTCTCGGGCC TTAGCGTACG TAGCTCGGGT AACCCCAATG GTGATATCGC CATCGAGTTC
ACGGGGTTGC GCCCAGGTGA GAAGCTTTTT GAAGAGTTGT TGATTGGCGA TGACGTTTCG
CCTACCGTCC ACCCGATGAT CATGGTAGCG AATGAAGACT ACGTCACTTG GGACGTCTTG
CGTGAACGTA TTGCCGTGTT ACTCAATGCA GTGGCGGTGG ATGACTTTGG CCGTATCCGG
CAACTGTTGC GTGAACTAGT GAACGGGTAT GTGCCGGAAG GAGAAATTGT CGACTGGATC
TACCAACAGC AGCGGCAGGA CAGTTGA
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| Protein sequence | MGRHAPVVQS RSFCGEESRM SDAKNSRVRE YLVNLSRRKK RLVQVCADVV LIWLALWLSF
IVRLGIDEMY NPVIKHAWLF MVAPLVAIPL FIRFGMYRAV MRYFGNDALV TIIKAVTLSS
LILAVVVYWY SNHQVIVPRS IIFNYWWLSM VIIGGLRLIM RQYFLGDWFT GAHQIPFANR
DDGLVKVAIY GAGTAGNQLL AALRMGRAMR PVAFIDDDSD LANRVISGLQ VYKPKHLQQM
IKETGAQEIL LALPSVSRAR RKEILALLEP YPLHVRSVPA FADLASGRVK VDDIQDVDIA
DLLGRDPVPA KEGLLERCIH KQTVLVTGAG GSIGSELCRQ IIGLGPTTLL LFDHSEYNLY
AILSELEQRV ARESLPVRLL PILGSVRNQQ HLAHVMSTWR VATVYHAAAY KHVPMVEHNM
AEGILNNVFG TLCTAQAALQ SGVANFVLIS TDKAVRPTNV MGGTKRLSEL ILQALSREAA
PVMYGDSSKI ARVNKTRFTM VRFGNVLGSS GSVIPLFHKQ IKAGGPITVT HPKITRYFMT
IPEAAQLVVQ AGAMGQGGDV FVLDMGEPVK IVELAEKMIH LSGLSVRSSG NPNGDIAIEF
TGLRPGEKLF EELLIGDDVS PTVHPMIMVA NEDYVTWDVL RERIAVLLNA VAVDDFGRIR
QLLRELVNGY VPEGEIVDWI YQQQRQDS
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