Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1718 |
Symbol | |
ID | 1043461 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1917139 |
End bp | 1918278 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637145122 |
Product | diguanylate phosphodiesterase |
Protein accession | NP_743875 |
Protein GI | 26988450 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0187822 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.029577 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAATATG AGGGCCGGGC ATGCAGATGC CCGGCCCTTA CTTTTCAGGA ATCCATCATG ACCGTTGCCG AACAGCTCAG TGCCTTGAGT GCCATCCTGG CTCAGCGCAG TATTCACAGT CTGTTCCAGC CAATCATGTG CCTGAGTGAA CATAGGGTAT TCGGCCATGA GGCGCTGAGC CGTGGCCCAT CCAATAGCCC GCTGCATGCG CCGCTCAACC TGTTTACCAT CGCCCGCCAG GCCGGCCGCC TGACCGAGCT GGAGGCCGCT TGCCGAGAAA GCGCCTGCCG ACGCTTCAGC GAGCAGCAAC TGCAGGGCAA ACTGTTTCTC AACATCTCAC CTGAATCGCT GCTGGAGCCG CACTACCCCT CCGGCCTGAC CCTGAAACTG CTCGAACAGG TTGGCCTGCC GCCCAGCCGG GTGGTGATCG AGTTGACCGA GCACACGCCC ACCGACGACT TCCAGCTGCT GTCCAATGCC CTGCACCACT ATCGCGACAT GGGCTTCTCG ATTGCCATCG ACGACCTGGG CGCGGGCTAT TCCAGCCTGC GCCTGTGGTC GGAGCTGCGC CCCGAGTACG TGAAGATCGA CCGGCACTTC ATTGACGGCA TCCACCGTGA CCCGCTCAAG CGCGAGTTTG TTGGCTCTAT CTTGCAGATC GCCCGCGCAT CGAAGGCACA GGTGATTGCC GAGGGCATCG AGCTGGCGGA AGAGCTGGCG GTGCTGGTGG AGATGGGCGT GGACCTGGTG CAGGGCTATT TGCTAGGGCG GCCACAGGAG ATGGGGGTGC GCGACAGCGG GCTTTTACCA GCGTTGACGC AGGTGCCACT GGCTGAACAA CCGACAGTGC ACTTGAATGC CACGATCGGG CAGCTGCTGG AGCTGTTTGG CCGATACCAG CACCTGGAGG CATTGGAAGT GGTGGATGCC GATGGCAGGG GGTGCGGGTT GATTCACAGG GATGCGCTGC CTGTGCCGGC CTATTCGCGG GTGAACCCGC TCCTACGGGG GCCTGTGCCC AATCACCAAT CAGGCGTAGG AGCGGGTTTA CCCGCGAATA CGGTGGCGGC GGCAACGGAG AACGACGGGT GGAAATTGGC CAGCAGGCCC TGCCTTTTCG CTCAGGGTCA CCACCTATAA
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Protein sequence | MKYEGRACRC PALTFQESIM TVAEQLSALS AILAQRSIHS LFQPIMCLSE HRVFGHEALS RGPSNSPLHA PLNLFTIARQ AGRLTELEAA CRESACRRFS EQQLQGKLFL NISPESLLEP HYPSGLTLKL LEQVGLPPSR VVIELTEHTP TDDFQLLSNA LHHYRDMGFS IAIDDLGAGY SSLRLWSELR PEYVKIDRHF IDGIHRDPLK REFVGSILQI ARASKAQVIA EGIELAEELA VLVEMGVDLV QGYLLGRPQE MGVRDSGLLP ALTQVPLAEQ PTVHLNATIG QLLELFGRYQ HLEALEVVDA DGRGCGLIHR DALPVPAYSR VNPLLRGPVP NHQSGVGAGL PANTVAAATE NDGWKLASRP CLFAQGHHL
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