| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1622 |
|---|
| Symbol | nlpD |
|---|
| ID | 1044856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 1817855 |
|---|
| End bp | 1818643 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637145022 |
|---|
| Product | peptidase M23B |
|---|
| Protein accession | NP_743779 |
|---|
| Protein GI | 26988354 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.752531 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.248121 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCTCGC TTCTGGTGGG TTGCTCAAGC ACCAGCAGCA ACAGCGCGCG GGTGGTCGAC
CGCAACAACA CCGTGCCCAA GCGCCCGGCG GTGACTTCTG GGCAATACAT CGTCAAGCCA
GGCGACACCC TGTTCTCCAT CGCCTTCCGT TATGGCTGGG ACTACAAGGA GCTGGCTGCA
CGCAACGGCA TTCAGGCGCC TTATACCATC CGCCCGGGCC AAGCGATTCG TTTCAGCAGC
GGTTCCAGCA GCCGCACCAC GGTGGTGTCC AGCCCGTCCT CGTCAAGCCG CACCACGGTC
ACGCGGCGGC CTGTGGGCAG CACAGCCACG GCGCCTGCCA GCACCAGCAA ACCGGCCACG
TCGGCGCCTT CCGCCCCTGC CCCTGTGGTT GCTACCGTAC CAGCCGCAGA GCGCGCGGTA
GGTGGGTGGA CCTGGCCTGC CAACGGTGTA CTGATTGGAA AATTCGCTTC AAACGGTAGT
TTGAATAAAG GCATTGATAT CGCCGGTGAT TTGGGACAGC CTGTTTTTGC TGCGTCTGAT
GGTGCGGTGG TTTATGCCGG GAGTGGTTTG AGGGGCTACG GCGAGCTGAT CATCATCAAG
CACAGCGACA CCTACGTCAG TGCCTACGGT CATAACCGCA GGCTGTTGGT TCGGGAGGGG
CAGCAGGTCA AGGCAGGGCA GTCGATTGCT GAAATGGGGT CTACGGGCAC AGATCGGGTG
AAGCTGCATT TCGAGATTCG CCGCCAGGGC AAACCCGTCG ATCCACTCCA GTTCCTGCCA
CGTCGTTGA
|
|---|
| Protein sequence | MGSLLVGCSS TSSNSARVVD RNNTVPKRPA VTSGQYIVKP GDTLFSIAFR YGWDYKELAA
RNGIQAPYTI RPGQAIRFSS GSSSRTTVVS SPSSSSRTTV TRRPVGSTAT APASTSKPAT
SAPSAPAPVV ATVPAAERAV GGWTWPANGV LIGKFASNGS LNKGIDIAGD LGQPVFAASD
GAVVYAGSGL RGYGELIIIK HSDTYVSAYG HNRRLLVREG QQVKAGQSIA EMGSTGTDRV
KLHFEIRRQG KPVDPLQFLP RR
|
|---|
| |