Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1618 |
Symbol | ispF |
ID | 1044870 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 1814609 |
End bp | 1815082 |
Gene Length | 474 bp |
Protein Length | 157 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637145018 |
Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
Protein accession | NP_743775 |
Protein GI | 26988350 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.520386 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTATTG GCCACGGCTA CGATGTGCAC CGTTTCTGCG ACGGTGATTT CATTACCCTG GGCGGGGTGC GTATCCCCCA CAAATACGGC CTGCTGGCCC ACTCCGACGG TGACGTGCTG CTGCACGCCC TGAGCGATGC CTTGCTTGGC GCTGCGGCGC TGGGCGACAT CGGCAAGCAC TTCCCTGACA CTGACCCGCA GTTCAAGGGG GCTGACAGCC GCGCGCTGCT GCGCCATGTG GTCGGCATCG TCAAGGCCAA GGGCTGGAAG GTCGGCAACG TTGACGCCAC CATCGTCGCC CAGGCACCGA AAATGGCCCC ACACATCGAA ACCATGCGCC AGCTGATCGC CGAAGACCTG CAGGTCGAGC TCGACCAGGT CAATGTCAAG GCCACCACCA CAGAGAAGCT TGGCTTTACC GGCCGCGAGG AGGGCATTGC CGTGCATTCG GTCGCCCTGC TGCTGCCAGC ATGA
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Protein sequence | MRIGHGYDVH RFCDGDFITL GGVRIPHKYG LLAHSDGDVL LHALSDALLG AAALGDIGKH FPDTDPQFKG ADSRALLRHV VGIVKAKGWK VGNVDATIVA QAPKMAPHIE TMRQLIAEDL QVELDQVNVK ATTTEKLGFT GREEGIAVHS VALLLPA
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