Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1464 |
Symbol | trmD |
ID | 1045768 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 1669428 |
End bp | 1670180 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637144865 |
Product | tRNA (guanine-N(1)-)-methyltransferase |
Protein accession | NP_743622 |
Protein GI | 26988197 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0255439 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.296694 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTAACC TTCGCGTAGA CGTCATCACG TTGTTCCCCG AGATGTTCTC GGCCATCACG GAGTACGGCA TTACCAGCCG CGCGGTGAAA CAAGGGTTGC TTCAGGTGAC TTGCTGGAAC CCGCGGGACT ACACCACAGA TCGTCACCAC ACGGTAGATG ATCGGCCGTT TGGCGGTGGT CCGGGCATGG TGATGAAAAT CAAGCCTCTG GAAGACGCCT TGGTTAGCGC CAGGCAGGCG ACCGGAGCAG CGGCGAAGGT GATCTACCTT TCGCCACAAG GCCGCAAGCT GACTCAGCAG GCGGTCAAAG GCCTGGCCGA ACAGGAATCG TTGATCCTGA TCGCCGGTCG TTATGAAGGC ATCGACGAGC GCTTTATCGA GGCTCATGTC GATGAGGAGT GGTCGATTGG CGACTATGTG CTTTCCGGTG GCGAGCTGCC GGCCATGGTA CTGATCGATG CGGTTACGCG ACTGCTGCCC GGAGCTTTAG GGCATGTGGA CTCGGCGGAA GAAGATTCCT TCACCGACGG TCTGCTCGAT TGCCCGCACT ACACCCGGCC TGAGGTGTAT GCGGATCAGC GTGTTCCCGA CGTGTTGCTA AGTGGCAACC ATGCACATAT CCGGCGTTGG AGGATGAAGC AGTCCCTTGG TAGGACCTTC GAACGACGCG CCGATCTTCT GGAAAGTCGC TCGCTTTCTG GAGAAGAGAA GAAGCTGCTC GAGGAATATC TCCGCGAGCG GGACGATAGT TAA
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Protein sequence | MGNLRVDVIT LFPEMFSAIT EYGITSRAVK QGLLQVTCWN PRDYTTDRHH TVDDRPFGGG PGMVMKIKPL EDALVSARQA TGAAAKVIYL SPQGRKLTQQ AVKGLAEQES LILIAGRYEG IDERFIEAHV DEEWSIGDYV LSGGELPAMV LIDAVTRLLP GALGHVDSAE EDSFTDGLLD CPHYTRPEVY ADQRVPDVLL SGNHAHIRRW RMKQSLGRTF ERRADLLESR SLSGEEKKLL EEYLRERDDS
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