| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1343 |
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| Symbol | lpxC |
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| ID | 1042966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 1530283 |
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| End bp | 1531194 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637144744 |
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| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
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| Protein accession | NP_743502 |
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| Protein GI | 26988077 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
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| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00568936 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000747731 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGATTAAAC AACGCACCCT GAAGAATACC ATCCGTGCCA CAGGTGTCGG TCTGCACTCC
GGGGAGAAGG TTTACCTGAC CCTCAAGCCT GCACCTGTTG ACACCGGCAT CGTCTTCCGC
CGCGCCGACC TCGACCCTGT GGTCGAGATC CCTGCGCGTG CGGCCAACGT CGGCGAGACA
ACCATGTCGA CGACGCTGGT CAACGGTGAC GTCAAGGTCG ATACGGTCGA GCACCTGCTC
TCCGCCATGG CGGGTCTGGG CATCGATAAC GCCTACGTCG AGCTCTCCGC CTCGGAAGTG
CCGATCATGG ATGGCAGCGC CGGTCCTTTT GTATTCCTGA TTCAGTCTGC CGGCCTGGAA
GAACAGGACG CAGCCAAGAA GTTCATCCGC ATCCTGCGTG AGGTAACCGT GGAAGAGGGC
GACAAGCGCG CCACGTTCCT GCCTTTCGAA GGTTTCAAGG TGAGCTTCGA GATCGATTTC
GATCACCCGG TGCTTCGCAA CCGGACCCAG AGCGCCAGCG TCGACTTTTC CAGCACGTCG
TTCGTGAAGG AAGTCAGCCG CGCGCGTACT TTTGGCTTCA TGCGTGACAT CGAGTACCTG
CGCAAGCACA ACCTTGCGTT GGGTGGCAGT GTCGAGAACG CCATCGTGGT CGATGAGGAC
GGCGTGCTCA ACGAAGACGG CCTTCGTTAC GAAGACGAAT TCGTCAAGCA CAAGATCCTC
GACGCCATCG GCGATCTGTA CCTGCTAGGC AACAGCCTGA TCGGCGAGTT CAAGGGCTTC
AAGTCCGGCC ACGCGCTGAA CAACCAGCTG TTGCGCAAGC TGATTGCTGA AACCGATGCC
TGGGAAGTGG TCACTTTCGA AGATGCCAGC ACGGCACCGA TCTCGTACAT GCGCCCTGTT
GCGGCCGTGT AA
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| Protein sequence | MIKQRTLKNT IRATGVGLHS GEKVYLTLKP APVDTGIVFR RADLDPVVEI PARAANVGET
TMSTTLVNGD VKVDTVEHLL SAMAGLGIDN AYVELSASEV PIMDGSAGPF VFLIQSAGLE
EQDAAKKFIR ILREVTVEEG DKRATFLPFE GFKVSFEIDF DHPVLRNRTQ SASVDFSSTS
FVKEVSRART FGFMRDIEYL RKHNLALGGS VENAIVVDED GVLNEDGLRY EDEFVKHKIL
DAIGDLYLLG NSLIGEFKGF KSGHALNNQL LRKLIAETDA WEVVTFEDAS TAPISYMRPV
AAV
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