| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0988 |
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| Symbol | gcvP-1 |
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| ID | 1044914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 1126693 |
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| End bp | 1129548 |
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| Gene Length | 2856 bp |
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| Protein Length | 951 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637144383 |
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| Product | glycine dehydrogenase |
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| Protein accession | NP_743149 |
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| Protein GI | 26987724 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
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| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATCA ACCTCGGCAC CGCCAACGAA TTCATCGCCC GTCACATAGG CCCGCGCGCC
GCTGACGAAC AGGCCATGCT CACTGCACTG GGCTTCGACT CGCTGGACGC CATGACCGCT
GCGGTCATCC CCGACAGCAT CAAAGGTACC AGCGTGCTTG GCTCGCACGA CGGCCAGAGC
GAGGCCGACG CGCTCGCTGC GCTCAAGGCC ATCGCTGGCA AGAACCAGCT GTTCAAAAGC
TACATCGGCC AGGGCTACTA CAACACCCAC ACTCCGGCAC CGATCCTGCG CAACCTGCTG
GAAAACCCGG CCTGGTACAC CGCCTACACC CCGTATCAGC CAGAAATTTC CCAAGGCCGC
CTGGAAGCAC TGCTGAACTT CCAGACCCTG ATCAGCGACC TCACCGGCCT GCCGATCGCC
AACGCCTCCT TGCTCGACGA AGCCACTGCT GCGGCCGAGG CCATGACCTT CTGCAAGCGC
CTGTCGAAGA ACAAGTCCAG CCATGCCTTC TTCGCCTCCG TGCACTGTCA CCCGCAAACC
CTCGACGTGC TGCGCACCCG TGCCGAGCCG CTGGGTATCG AGGTTGTGGT TGGCGACGAG
CGCGAGCTGG GCGATGTCAG CGCCTTCTTC GGCGCCCTGC TGCAATACCC GGCCAGCAAC
GGTGAAGTGT TCGACTACCG CGAGGTCGTG CAGCGCTTCC ACGCGGCCAA CGCCCTGGTC
GCCGTAGCGG CAGACCTGCT GGCCCTGACC CTGCTGACCC CACCGGGCGA GTTCGACGCC
GACGTGGCCA TCGGCAGCGC CCAGCGCTTC GGCGTGCCAC TGGGCTTCGG TGGTCCGCAC
GCGGCTTACT TCGCCACCCG CGACGCGTTC AAGCGCGACA TGCCTGGCCG CCTGGTCGGC
GTGTCGATCG ACCGCTTCGG CAAAACCGCC CTGCGTCTGG CCATGCAGAC CCGCGAGCAG
CACATCCGCC GCGAAAAGGC CACCAGCAAC ATCTGCACCG CCCAGGTGCT GCTGGCCAAC
ATCGCCAGCA TGTTCGCCGT GTACCACGGC CCTGCCGGTC TCAAGCGCAT TGCCGAGCGC
ACCCACGCCC TGACCGCGAT CCTCGCCGCC GGCCTGAAGG CGCTGGGCGT ACAAGTGGTG
GGCGCCAGCG CCTTCGATAC CCTGACCCTG GCCACCGGCA CTGCCACCGC CAGCCTGCAT
GACAAGGCAC GCGCCCAGGG CATCAACCTG CGCCAGATCG ATGCCGCCCA TGTGGGCCTG
TCTCTGGACG AAACCAGCAC TCAGGCTGAC GTCGAGTCGC TGTGGCAGCT GTTGGGTGGC
GAGCAGGCAC AGCCTGATTT CACCGCACTG GCCGCCAGCA CCGGTTCCCT GCTGCCTGCC
GCCCTGCTGC GCCAGTCGGC CATCCTCGAA CACCCGGTGT TCAACCGCTA CCACAGCGAA
ACCGAGCTGA TGCGCTACCT GCGCCGCCTG GCCGACAAGG ACCTGGCGCT GGACCGCAGC
ATGATCCCGC TGGGCTCGTG CACCATGAAG CTGAACGCCG CCAGCGAAAT GATCCCGGTC
ACCTGGGCCG AGTTCGGCAA CCTGCACCCG TTCGCCCCGG CCGAGCAGAG CCAGGGCTAC
CTGCAGATGA CCACCGAACT GGAGGCCATG CTGTGCGCGG CCACTGGCTA TGATGCCGTG
TCGCTGCAGC CCAACGCCGG CTCGCAGGGC GAATACGCCG GGCTGTTGGC GATCCGCGCC
TACCACCGCA GCCGTGGTGA AGGCCATCGC GATATCTGCC TGATCCCGTC GTCGGCCCAT
GGCACCAACC CGGCCACCGC ACACATGGCT GGCATGCGTG TCGTGGTTAC CGCCTGTGAC
GCCCGTGGCA ACGTCGATGT CGAGGACCTG CGCGCCAAAG CCATCGAGCA CCGCGAGCGC
CTGGCTGCAA TCATGATCAC CTACCCGTCG ACCCACGGCG TGTTCGAGGA AGCGATCGGC
GAAATCTGCG CGATCATCCA CGACAACGGC GGCCAGGTGT ACATCGATGG CGCCAACATG
AACGCCATGG TCGGACTGTG CGCGCCAGGC AAGTTCGGCG GCGACGTTTC CCACCTGAAC
CTGCACAAGA CCTTCTGCAT CCCGCACGGT GGTGGTGGCC CGGGTGTTGG CCCGATTGGC
GTCAAGTCGC ACCTGGCGCC GTTCCTGCCA GGCCATGCAC AGCTGGAAAA CACCCAGGGC
GCGGTATGCG CTGCGCCGTT CGGTAGCGCC AGCATCCTGC CCATCACATG GATGTATATC
CGCATGATGG GCGGTGCCGG CCTCAAACGT GCCTCGCAGA TGGCAATCCT CAACGCCAAC
TACATCGCCC GCCGCCTGGA AGAGCACTAT CCTGTTCTGT ATACCGGCGG TAACGGCCTG
GTGGCTCACG AGTGCATTCT CGACCTGCGC CCACTGAAGG ACACCAGCGG CATCAGTGTC
GACGACGTGG CCAAGCGGTT GATCGACTTC GGCTTCCACG CCCCGACCAT GTCCTTCCCG
GTGGCTGGCA CGCTGATGAT CGAACCGACC GAAAGCGAGT CCAAAGAAGA ACTGGACCGC
TTCTGCAACG CAATGATCCA GATCCGCGAA GAAATCCGCG CGGTGGAGGA CGGTAGCCTG
GACAAGGACG ACAACCCGCT GAAAAACGCA CCGCACACTG CGGCTGAGCT GGTTGGCGAA
TGGACCCATG GCTACAGCCG CGAGCAGGCG GTATACCCCC TGGCGAGCCT GGTGGAAGGC
AAGTACTGGC CGCCGGTCGG CCGGGTCGAC AACGTGTTCG GCGACCGCAA CCTGGTGTGC
GCCTGCCCGT CGATCGAGAG CTATCAGGAC GCCTGA
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| Protein sequence | MTINLGTANE FIARHIGPRA ADEQAMLTAL GFDSLDAMTA AVIPDSIKGT SVLGSHDGQS
EADALAALKA IAGKNQLFKS YIGQGYYNTH TPAPILRNLL ENPAWYTAYT PYQPEISQGR
LEALLNFQTL ISDLTGLPIA NASLLDEATA AAEAMTFCKR LSKNKSSHAF FASVHCHPQT
LDVLRTRAEP LGIEVVVGDE RELGDVSAFF GALLQYPASN GEVFDYREVV QRFHAANALV
AVAADLLALT LLTPPGEFDA DVAIGSAQRF GVPLGFGGPH AAYFATRDAF KRDMPGRLVG
VSIDRFGKTA LRLAMQTREQ HIRREKATSN ICTAQVLLAN IASMFAVYHG PAGLKRIAER
THALTAILAA GLKALGVQVV GASAFDTLTL ATGTATASLH DKARAQGINL RQIDAAHVGL
SLDETSTQAD VESLWQLLGG EQAQPDFTAL AASTGSLLPA ALLRQSAILE HPVFNRYHSE
TELMRYLRRL ADKDLALDRS MIPLGSCTMK LNAASEMIPV TWAEFGNLHP FAPAEQSQGY
LQMTTELEAM LCAATGYDAV SLQPNAGSQG EYAGLLAIRA YHRSRGEGHR DICLIPSSAH
GTNPATAHMA GMRVVVTACD ARGNVDVEDL RAKAIEHRER LAAIMITYPS THGVFEEAIG
EICAIIHDNG GQVYIDGANM NAMVGLCAPG KFGGDVSHLN LHKTFCIPHG GGGPGVGPIG
VKSHLAPFLP GHAQLENTQG AVCAAPFGSA SILPITWMYI RMMGGAGLKR ASQMAILNAN
YIARRLEEHY PVLYTGGNGL VAHECILDLR PLKDTSGISV DDVAKRLIDF GFHAPTMSFP
VAGTLMIEPT ESESKEELDR FCNAMIQIRE EIRAVEDGSL DKDDNPLKNA PHTAAELVGE
WTHGYSREQA VYPLASLVEG KYWPPVGRVD NVFGDRNLVC ACPSIESYQD A
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