Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0952 |
Symbol | rpoN |
ID | 1044867 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1094565 |
End bp | 1096058 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637144347 |
Product | RNA polymerase factor sigma-54 |
Protein accession | NP_743113 |
Protein GI | 26987688 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCAT CGCTCGTCCT AAAAATGGGC CAGCAACTGA CGATGACACC TCAGTTGCAA CAGGCCATCC GCCTGCTCCA GCTTTCTACC CTGGACCTCC AACAGGAAAT CCAGGAAGCG CTGGAGTCGA ACCCGATGCT CGAACGTCAG GAAGACGGCG AAGACTTCGA CAACAGCGAC CCGATGGCCG ACAACGCCGA GAACAAGCCG GCCGCCGAAG TTCAGGACAA CAGTTTCCAG GAAAGCACCG TCAGCGCCGA CAACCTGGAA GACGGTGAGT GGAGCGAGCG CATCCCCAAC GAGCTCCCGG TCGATACCGC TTGGGAAGAC ATCTACCAGA CCAGCGCCAG CAGCCTGCCG AGCAACGATG ACGACGAATG GGACTTCACC ACGCGCACAT CGGCCGGCGA AAGCCTGCAA AGCCACCTGC TGTGGCAGTT GAACCTGGCA CCGATGTCCG ACACCGACCG CTTGATTGCC GTGACCCTGA TCGACAGCAT CAACGGCCAG GGCTACCTGG AAGACACACT CGAAGAAATC TGCGCCGGTT TCGACCCGGA GCTGGATATC GAACTGGACG AGGTCGAAGC GGTACTGCAC CGCATCCAGC AGTTCGAGCC GGCTGGCGTT GGCGCCCGCA ACCTCGGCGA ATGCCTGTTG CTGCAACTGC GCCAGCTGCC CGCTACAACT CCGTGGATGA CCGAAGCCAA GCGCCTGGTC ACCGATTTCA TCGACCTGCT CGGCAGCCGT GACTACAGCC AGCTGATGCG GCGGATGAAA ATCAAGGAAG ACGAGCTGCG CCAGGTCATC GAACTGGTGC AAAGCCTTAA CCCGCGCCCT GGTTCGCAGA TCGAGTCCAG CGAGCCCGAG TACGTGGTGC CCGACGTCAT CGTGCGCAAG GACAGCGACC GTTGGCTGGT AGAACTGAAC CAGGAAGCCA TCCCACGCCT GCGCGTCAAC CCACAATACG CCGGCTTCGT GCGCCGTGCC GACACCAGCG CCGACAACAC CTTCATGCGC AACCAGCTGC AGGAAGCGCG CTGGTTCATC AAGAGCCTGC AAAGCCGTAA CGAAACCCTG ATGAAGGTTG CCACGCAGAT CGTCGAGCAC CAGCGCGGCT TCCTCGACCA CGGCGACGAA GCGATGAAGC CGTTGGTACT GCATGACATT GCCGAAGCCG TAGGCATGCA CGAATCGACC ATTTCGCGGG TTACCACGCA GAAATACATG CACACCCCGC GTGGCATCTA CGAACTGAAA TACTTTTTCT CCAGCCATGT CAGCACCTCC GAAGGCGGAG AATGCTCGTC CACGGCGATC CGCGCGATCA TCAAGAAACT GGTTGCGGCG GAAAATCAGA AAAAGCCATT GAGTGACAGC AAGATCGCTG GTTTACTGGA GGCACAAGGC ATCCAGGTAG CCCGTCGCAC CGTCGCCAAG TACCGCGAGT CCCTCGGCAT CGCACCGTCG AGCGAACGCA AGCGACTGAT GTAG
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Protein sequence | MKPSLVLKMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPMLERQ EDGEDFDNSD PMADNAENKP AAEVQDNSFQ ESTVSADNLE DGEWSERIPN ELPVDTAWED IYQTSASSLP SNDDDEWDFT TRTSAGESLQ SHLLWQLNLA PMSDTDRLIA VTLIDSINGQ GYLEDTLEEI CAGFDPELDI ELDEVEAVLH RIQQFEPAGV GARNLGECLL LQLRQLPATT PWMTEAKRLV TDFIDLLGSR DYSQLMRRMK IKEDELRQVI ELVQSLNPRP GSQIESSEPE YVVPDVIVRK DSDRWLVELN QEAIPRLRVN PQYAGFVRRA DTSADNTFMR NQLQEARWFI KSLQSRNETL MKVATQIVEH QRGFLDHGDE AMKPLVLHDI AEAVGMHEST ISRVTTQKYM HTPRGIYELK YFFSSHVSTS EGGECSSTAI RAIIKKLVAA ENQKKPLSDS KIAGLLEAQG IQVARRTVAK YRESLGIAPS SERKRLM
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