Gene PP_0882 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0882 
SymboldppA 
ID1044764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp1022076 
End bp1023710 
Gene Length1635 bp 
Protein Length544 aa 
Translation table11 
GC content61% 
IMG OID637144277 
Productdipeptide ABC transporter, periplasmic dipeptide-binding protein 
Protein accessionNP_743043 
Protein GI26987618 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGCAG GGAGTTTTCA ACACATGCAC AGAGCTTTCA TGAAATCGCG GCCGTTGCGC 
CTAGCCCTGG TCGCGCTGCT TCTGGGCGGC GCCACGCAAC TGGCGGCCAA GCCGCTGGTG
GTGTGTACAG AAGCTAGCCC GGAAGGGTTC GACATCGTCC AGTACACCAC CGCAGTCACC
GCCGATGCCT CGGCCGAGAC AGTGTTCAAC CGCCTGGTCG ACTTCAAACC CGGCACCACC
GAGATCCAGC CAGCCCTGGC CGAGCGCTGG GACATTTCAG CCGACGGCCT GACCTACACC
TTCCATCTGC GTCAGGGGGT GAAGTTCCAC ACCACCGACT ACTTCAAGCC CACCCGTGAC
TTGAACGCCG ATGACGTGCT GTGGAGCCTC AATCGCCAGC TCGACCCGAA CCACCCCTGG
CATGACAAGA CCAGCGTCGG CTACCCGTAC TTCGAAAGCA TGGGGTTCAA GGAACTGCTC
AAGTCGGTCA GCAAGGCTGA CGAGCACACC GTGGTGATTA CCCTCAGCCG ACCGGAAGCG
CCGTTCCTGC GCGACATGGC CATGGGCTTT ACCTCGATCT ACTCCGCCGA ATACGGCGAC
CAGTTGCTCA AGTCTGGCAA GACCGCCGAG CTGAACAGCA AGCCGATCGG CACCGGCCCT
TTCATCTTCC AGCGTTACAA CAAGGACGCC CAGGTCCGCT TCAAGCCCAA CCCGGACTAT
TTCCGCGGCA AGCCGCCGGC CGATGCGCTG GTGTTCGCCA TCGCCATCGA CAGCAACGTG
CGCCTGCAGA AACTGCGCGC CAACGAGTGC CAGGTGGCGC TCTATCCCAA GCCCGATGAC
GTGCCATCGA TCAAGCAAGA CCCGAAACTC AAGGTTGAAG AAATCGAGGC CCTGGTCACC
GGCTACATCG CCATGAATAC CCAGCACAAA TACCTCAACG ACGTGCGCGT GCGTAAAGCC
ATCAACATGG CCTTCGACCG CCAGACCCAT GTCGACCAAC TGTTTGGCAA AGGCAACGCA
CTGGTGGGTG TAAACCCTTA CCCACCCACC ATGATCGGCT ACAACACCCA TAACCAGAAC
CCACCGCGCG ACCTCGATAA AGCCCGCGCA CTGCTCAGCC AGGCCGGTGT ACCCGAGGGC
ACGGTAATCA CCCTGTTCAC CCGCAACGGC GGCGGCCCGA CCAACCCCAA CCCGCGCCTG
TCTGCCGAGA TGCTGCAGGC CGATCTCAAA CAGATCGGCC TCAAGCTGGA TATCCGCGTC
ATGGAATGGG CCGAGATGCT GCGCCGGGCG AAGAACGGCG AAGCCGACCT GGTGTCCACC
GGCTGGGCCG GCGACAACGG CGACCCGGAC AACTTCCTCA GCCCACTGCT CAGTTGCGAT
GCCGTGAAAA GTGGCGAGAA CTATGCGCGC TGGTGCAACC CCAAGTTCCA GGAGCTGATC
AGCCGCGCCC GCGAAGTGAT CGACAACGAC GAGCGTGCAA GGCTCTATAA CGAGGCATTG
AAAGTGTACG ATGACGAACA ACCCTGGATC AGCATGGCTC ATCCAAAGAT GTTCACCGCC
ATGCGTGACA ACGTGGAGGG CTACGTGATC AACCCTCTGA CCAACAACAA CTTCGCCACC
ACCAAGGTGA AGTAG
 
Protein sequence
MQAGSFQHMH RAFMKSRPLR LALVALLLGG ATQLAAKPLV VCTEASPEGF DIVQYTTAVT 
ADASAETVFN RLVDFKPGTT EIQPALAERW DISADGLTYT FHLRQGVKFH TTDYFKPTRD
LNADDVLWSL NRQLDPNHPW HDKTSVGYPY FESMGFKELL KSVSKADEHT VVITLSRPEA
PFLRDMAMGF TSIYSAEYGD QLLKSGKTAE LNSKPIGTGP FIFQRYNKDA QVRFKPNPDY
FRGKPPADAL VFAIAIDSNV RLQKLRANEC QVALYPKPDD VPSIKQDPKL KVEEIEALVT
GYIAMNTQHK YLNDVRVRKA INMAFDRQTH VDQLFGKGNA LVGVNPYPPT MIGYNTHNQN
PPRDLDKARA LLSQAGVPEG TVITLFTRNG GGPTNPNPRL SAEMLQADLK QIGLKLDIRV
MEWAEMLRRA KNGEADLVST GWAGDNGDPD NFLSPLLSCD AVKSGENYAR WCNPKFQELI
SRAREVIDND ERARLYNEAL KVYDDEQPWI SMAHPKMFTA MRDNVEGYVI NPLTNNNFAT
TKVK