| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0864 |
|---|
| Symbol | |
|---|
| ID | 1044738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 1001821 |
|---|
| End bp | 1002936 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637144259 |
|---|
| Product | ornithine decarboxylase |
|---|
| Protein accession | NP_743025 |
|---|
| Protein GI | 26987600 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0390948 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCGT TCGCTGACAA GCAGGAAACC CCGTTCGTAC TCATCGACAC CCAGATGATC
AGCCAGGCGT ACGACGACCT GCGCGCCGGT TTCGAATTCG CCAAGGTCTA CTACGCGGTC
AAGGCCAACC CGGCCGTTGA AATCATCGAC CTGCTCAAAG AGAAAGGTTC GAGCTTCGAC
ATCGCCTCGA TCTACGAGCT GGACAAAGTG ATGGGCCGCG GTGTCAGCGC CGACCGCATC
AGCTACGGCA ACACCATCAA GAAGTCCAAG GACATCCGCT ACTTCTATGA GAAGGGCGTG
CGCCTGTACG CCACCGACTC GGAAGCCGAC CTGCGCAACA TCGCCAAGGC CGCACCGGGC
TCGAAAGTGT ATGTGCGTAT TCTGACTGAA GGCTCCACCA CTGCCGACTG GCCACTGTCC
CGCAAGTTCG GCTGCCAGAC CGACATGGCC ATGGACCTGC TGATCCTCGC CCGCGACCTG
GGCCTGGTGC CATACGGCAT CTCCTTCCAC GTGGGCTCGC AGCAACGCGA CATCAGCGTG
TGGGACGCCG CCATCGCCAA GGTCAAGGTA ATCTTCGAAC GTCTGAAAGA AGAAGACGGC
ATCGAACTGA AGCTGATCAA CATGGGTGGT GGCTTCCCGG CCAACTACAT CACCCGTACC
AACAGCCTGG AAACCTACGC CGAAGAAATC ATCCGCTTCC TCAAGGAAGA CTTCGGTGAC
GAACTGCCGG AGATCATCCT CGAGCCCGGC CGTTCGCTGA TCGCCAACGC CGGCATCCTG
GTCAGCGAAG TGGTGCTGGT CGCACGCAAG TCGCGTACCG CCGTCGAGCG CTGGATCTAC
ACCGACGTGG GCAAGTTCTC CGGCCTGATC GAAACCATGG ACGAAGCCAT CAAGTTCCCG
ATCTGGACCG AGAAGAAAGG CGAAGCCGAG GAAGTGGTCA TCGCCGGCCC GACCTGCGAC
AGCGCCGACA TCATGTACGA GAACTACAAG TACGGGCTGC CGCTGAACCT GGCCATCGGT
GACCGCCTGT ACTGGCTGTC GACCGGCGCC TACACCACCA GCTACAGCGC AGTGGAATTC
AACGGTTTCC CACCGCTGAA GGCTTACTAC CTGTAA
|
|---|
| Protein sequence | MKAFADKQET PFVLIDTQMI SQAYDDLRAG FEFAKVYYAV KANPAVEIID LLKEKGSSFD
IASIYELDKV MGRGVSADRI SYGNTIKKSK DIRYFYEKGV RLYATDSEAD LRNIAKAAPG
SKVYVRILTE GSTTADWPLS RKFGCQTDMA MDLLILARDL GLVPYGISFH VGSQQRDISV
WDAAIAKVKV IFERLKEEDG IELKLINMGG GFPANYITRT NSLETYAEEI IRFLKEDFGD
ELPEIILEPG RSLIANAGIL VSEVVLVARK SRTAVERWIY TDVGKFSGLI ETMDEAIKFP
IWTEKKGEAE EVVIAGPTCD SADIMYENYK YGLPLNLAIG DRLYWLSTGA YTTSYSAVEF
NGFPPLKAYY L
|
|---|
| |