| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0469 |
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| Symbol | rplF |
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| ID | 1044228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 557869 |
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| End bp | 558402 |
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| Gene Length | 534 bp |
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| Protein Length | 177 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637143855 |
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| Product | 50S ribosomal protein L6 |
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| Protein accession | NP_742635 |
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| Protein GI | 26987210 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0097] Ribosomal protein L6P/L9E |
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| TIGRFAM ID | [TIGR03654] ribosomal protein L6, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000206818 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000293736 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTCGCG TCGCTAAGAA CCCCGTTAAG CTGCCATCCG GTGTCGAAGT CAAATTCGCC
GGTCAGCAGC TTTCGGTGAA GGGTGCCAAA GGTACTCTCG AACTGAACGT TCACTCGTCT
GTTGAAGTTA CCGAAGAGTC TGGTGAGCTG CGTTTCGTCG CTCGCAATGG TGACCAGCAA
GCTCGTGCCA TGGCCGGTAC CACCCGCGCT CTGGTCAACA ACATGGTCCA AGGCGTAAGC
CAAGGCTTCG AGCGCAAGCT CCAGCTGGTC GGTGTTGGTT ACAAGGCACA GGCTAAAGGC
ACCGTCCTGA ACCTGGCCCT GGGCTTCTCT CACCCAGTGG ACTACGAACT GCCAGCCGGT
ATCACCGCTG AAACACCTAG CCAGACCGAC ATCCTGATCA AGGGTATCGA CAAGCAGCTG
GTAGGTCAGG TGGCCGCTGA AATCCGCGAC TTCCGTCCGC CAGAGCCTTA CAAAGGTAAA
GGTGTGCGTT ACGCGGACGA AGTAGTCCGT CGTAAAGAAG CCAAGAAGAA GTAG
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| Protein sequence | MSRVAKNPVK LPSGVEVKFA GQQLSVKGAK GTLELNVHSS VEVTEESGEL RFVARNGDQQ
ARAMAGTTRA LVNNMVQGVS QGFERKLQLV GVGYKAQAKG TVLNLALGFS HPVDYELPAG
ITAETPSQTD ILIKGIDKQL VGQVAAEIRD FRPPEPYKGK GVRYADEVVR RKEAKKK
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