| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0386 |
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| Symbol | |
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| ID | 1044096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 467212 |
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| End bp | 470955 |
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| Gene Length | 3744 bp |
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| Protein Length | 1247 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637143766 |
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| Product | sensory box protein |
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| Protein accession | NP_742553 |
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| Protein GI | 26987128 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.298787 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTTGA AGCCGGCCAT TCTGTTGCTG ATCCTGATTT TGTGGAACAC AACGGCCGGC
GCCCTGACCC TGACAGATGA GGAGAACGCC TGGCTGGCTG CCCACCCGCA GCTGAAACTT
GGCGTAGACG CCTCTTGGCC ACCGTTCGAG TTTCGCGACC AGGAGGGCCG GTACCAGGGA
TTGGCCGCCG ACTACATCGC CATGATCCAG CAGCGCCTGG GCGTGACGTT CAAACCGGTC
GAACCCAGCA GCTGGACCGA GGTGCTGGCG CAGGCGCGGG AAAGCCGTAT CGACCTGCTG
CCCGGCATCA TGTCCACCCC CGAACGCCAG GGCTTCCTGG CTTTCACTCG CCCGTACCTC
GACTTCCCCA TTGTGATCCT CGCGCACAAA GGCGGCGCAC AACCGCGCAA GCTGGCTGAC
CTGTACGGCC TGAAAATTGC CGTGGTCGAG AACTACGCCC CGCACGAGTT GCTGCGTACC
CACCACCCGG ACCTCAACCT GGTTGCCCTG CCAAACGTCA GCTCCACGCT GCAAGCCCTG
GCCACCGACC AAGTGGATGC CGTGGTCGGC GACCTCGCTT CCAGTATCTG GAGCCTGCGC
CAACTCAAGC TCGACGGCCT CTACGTCAGC GGCGAAACGC CCTACCGCTA CCAGTTGGCG
ATGGCCGTTC CCCGCGACAA GAGCGTGCTG GTCGGCATCC TCGACAAAGT GATGGCCGAC
ATGAGCAGCA GCGAAATCAG CCAGATCCAG CAACACTGGG TGGGCAATGT GGTCGACCAG
CGGATGTTCT GGTCCGACCT GCTGGTGTAT GGCCTGCCAA CGGTGCTGCT GCTGATGGCT
GTGCTGGCAG TGGTCATTCG CATCAACCGC CGGCTCAGCT CGGAAATTTC CCGGCGCATC
GCCCTTGAGC AAGAACTGCG CAGCAGCGAG TACCACTACC GCGGCCTGGT CGAGAGCCTG
TCAGCCATCG CCTGGGAAGC CGATGCCAAC GACTTCACCT ACAGCTACGT TTCACCCCAT
GCCGAAGACC TGCTTGGCTA CCCATTGAGT GACTGGCTCA GGCCCGGTTT CTGGCGCAGC
ATCCTGCACC CGGAGGACGC GCTCTGGGCT CAGGCCTACT GCGACAGCGA GACCGCAGCG
GGGCGCGACC ACAGCCTGGA CTACCGGGTG ATCCGGGCTG ACGGTCAGCC CCTCTGGGTA
CGCAATATCG TCAGCATGAT CGAGCACGGC CACCAGCCAG TGATGCGCGG GCTGATGATC
GACATCAGTG AAACCAAGCG CACGGAGGAC GCCCTGCGCC TGTCCGAACA GAAGTTCGCC
TCGGTATTCC AGCAGTGCCC CGATATCTTG CTGATCGCTC GCCACAGCGA TGGCTGCCTG
CTGGAGGTGA ACGAGGCTTT CGAAGAGCAG ATCGGACTGC CCCCAGACCA GGTCATTGGC
CGCACTGCCA CCGACCTTGA CCTGTGGGGC GTAGAGGGCA GTGGCCCGCT CCTGCTTGAA
AGGTTGCACC AAGGTGGTAT CCGTAACCTG GAAATGAGCT TCCGCCGCAG CAACGGCCAA
CTGTTCACTG GCCTGACTTC GGCTGAAACC TTCGAACTGG ACGGCACGCC CGCGCTGGTA
GTGGCAGTAC GCGACATCAG TCAGCTCAAG GAGACCCAGC AGCAGCTGCA AACTTCAGAA
GAAAAGTTCG CAAAGGCTTT CCACGCCTCG CCCGACGGCC TGCTGCTGTC GCGCCAGAGC
GACGGTTTGC TGCTGGAGGT GAACGAAGGC TTCTGCCGCC TCACCGGCTA CGACCTCAAC
CCAACCATCG ACCAGACCTC GCTGGACCTG GGTATCTGGG TCGACCTCAA CGAGCGCAAA
CGCCTGGTCG ACCAGCTAAA CCGCGACGGC TTCGTGCGCG ACTTCACCTG TCATATCCGC
CGCAGCGACG GGCAGATCCG ACTGTGCGAG CTTTCCGCCC GGCCCCTGCC GATTACCGGC
GTTGACTGCA TGCTGACCAT CGCCCGCGAC ATCACCGAGC GTCACCTGAT GCAAGAAAAA
CTGCAGCTGG CCGCCACGGT GTTCGAGAAC ACTGCCGAAG GGGTGCTGAT TACCGACATT
GACCAGCGCA TCAGTGCCGT CAACCGCGCC TTCAGCGAAA TCACCGGCTA CAGCGAGATC
GAGGCCCTCG GCCAGACCCC GCGCCTGCTC GCCTCTGGCC AGCACGACAG CGCTTTCTAC
CTGGCCATGT GGCACCAGCT TACCGCCGAG GGCCACTGGC AGGGCGAAAT CTACAACAAG
CGCAAGAACG GCGAACTTTA CCCAAGCTGG CTGACCATAA GCGCCGTGCG CAACAGCGAC
CGCGAGATCA CCCACTTCGT GGCGGTTTTT GCAGACATCT CCAGCATCAA GCACGCCCAG
GCCAAACTCG ACTATCAAGC CCACCACGAC CCGCTGACCG GCCTGCCCAA TCGCACCTTG
TTCGAAAACC GGCTCCAGGG CGTACTCACC TGTGCGCAGG TGTCCAACCG CCAGGGCGCA
GTGCTGTTCC TGGACCTCGA CCGCTTCAAG CACATCAACG ACAGCCTTGG CCACCCGGTC
GGCGACCTGC TGCTCAAGGG CATCGCCCAG CGCCTGAAAG AGCAGGTACG CGACGTTGAC
ACCGTAGCCC GCCTGGGTGG CGACGAGTTC ATCATTCTGC TGCCCGGCTT GCACAAGCCC
AGTGACGCCA GCACTATCGC CAACAAACTA CTGGCCTGCT TCAATGCACC GTTCCAGGCC
GGCGAGCATG AGTTTTTCAC CAGCGCCAGC ATCGGCATCA GCCTCTACCC ACAGGATGGC
ACCGACGTCT CCACACTCAT CCGCAACGCC GACGCCGCCA TGTACCGCTC CAAGGCCAAG
GGCCGCAACC GCGTCGAAGC CTACACCCGC GACCTCACCG CCCAGGCCAG CGAGCGCATC
GCCCTGGAGC ATGAGCTGCG CCGGGCCGTC GAACGCAACG AAATGAGCCT GTGCTTCCAG
CCCAAGCTCA GCCTGAAGAC CCAGAGCCTG GTGGGTGCCG AAGCGCTGAT CCGCTGGAGC
CACCCGACCT TTGGCGAGGT ACCGCCGGAA CACTTCATCC ACTTGGCGGA AGAGAACGGC
ACCATCCTGC AGCTCGGCGA CTGGGTACTG GAGCAAGCCT GCCGGCAGAT GCAGGCCTGG
AAGCAGCACT ACCAACCCTT CGGCCCGCTG TCGATCAACC TTGCCGGCGC CCAGCTGCGC
CACCCGCACC TGGCACGGCG CATCGAACAA CTGCTCAAGC ACCATCAGCT GAAGGCCGGT
GACCTGCAGT TGGAAATCAC CGAAAACTTC ATCATGAGCC AGGCAGAAGA GGCCCTGGCC
GTGCTGTACC AACTGAAGAA ACTCGGCGTA CAGCTGGCCA TCGATGACTT CGGCACCGGC
TATTCCTCGC TCAGCTACCT CAAGCGCCTG CCGCTGGACA TCCTCAAGAT CGACAAGTCG
TTCATCCGCG GCCTGCCCGA CGATCCACAT GACGCCGCCA TTGCCCGGGC GATCATTGCC
CTGGGCCGCA GCATGCAGCT GACCATCATT GCCGAAGGCG TGGAGAACCA GGCCCAGCAA
CGTTTTCTGG CGGCCGAGGG CTGCGAGCAG ATCCAGGGCT ACATCGTCAG CCTCCCGCTA
CCACCAGAGG AATTCGCGGC CGCGTTTCTT CGCATAGCAC TATCGGATCT TTCAGATGGC
ACAGGTGCGA AACCCTCGTT ATAA
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| Protein sequence | MSLKPAILLL ILILWNTTAG ALTLTDEENA WLAAHPQLKL GVDASWPPFE FRDQEGRYQG
LAADYIAMIQ QRLGVTFKPV EPSSWTEVLA QARESRIDLL PGIMSTPERQ GFLAFTRPYL
DFPIVILAHK GGAQPRKLAD LYGLKIAVVE NYAPHELLRT HHPDLNLVAL PNVSSTLQAL
ATDQVDAVVG DLASSIWSLR QLKLDGLYVS GETPYRYQLA MAVPRDKSVL VGILDKVMAD
MSSSEISQIQ QHWVGNVVDQ RMFWSDLLVY GLPTVLLLMA VLAVVIRINR RLSSEISRRI
ALEQELRSSE YHYRGLVESL SAIAWEADAN DFTYSYVSPH AEDLLGYPLS DWLRPGFWRS
ILHPEDALWA QAYCDSETAA GRDHSLDYRV IRADGQPLWV RNIVSMIEHG HQPVMRGLMI
DISETKRTED ALRLSEQKFA SVFQQCPDIL LIARHSDGCL LEVNEAFEEQ IGLPPDQVIG
RTATDLDLWG VEGSGPLLLE RLHQGGIRNL EMSFRRSNGQ LFTGLTSAET FELDGTPALV
VAVRDISQLK ETQQQLQTSE EKFAKAFHAS PDGLLLSRQS DGLLLEVNEG FCRLTGYDLN
PTIDQTSLDL GIWVDLNERK RLVDQLNRDG FVRDFTCHIR RSDGQIRLCE LSARPLPITG
VDCMLTIARD ITERHLMQEK LQLAATVFEN TAEGVLITDI DQRISAVNRA FSEITGYSEI
EALGQTPRLL ASGQHDSAFY LAMWHQLTAE GHWQGEIYNK RKNGELYPSW LTISAVRNSD
REITHFVAVF ADISSIKHAQ AKLDYQAHHD PLTGLPNRTL FENRLQGVLT CAQVSNRQGA
VLFLDLDRFK HINDSLGHPV GDLLLKGIAQ RLKEQVRDVD TVARLGGDEF IILLPGLHKP
SDASTIANKL LACFNAPFQA GEHEFFTSAS IGISLYPQDG TDVSTLIRNA DAAMYRSKAK
GRNRVEAYTR DLTAQASERI ALEHELRRAV ERNEMSLCFQ PKLSLKTQSL VGAEALIRWS
HPTFGEVPPE HFIHLAEENG TILQLGDWVL EQACRQMQAW KQHYQPFGPL SINLAGAQLR
HPHLARRIEQ LLKHHQLKAG DLQLEITENF IMSQAEEALA VLYQLKKLGV QLAIDDFGTG
YSSLSYLKRL PLDILKIDKS FIRGLPDDPH DAAIARAIIA LGRSMQLTII AEGVENQAQQ
RFLAAEGCEQ IQGYIVSLPL PPEEFAAAFL RIALSDLSDG TGAKPSL
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