Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0369 |
Symbol | |
ID | 1044078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 447502 |
End bp | 448704 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637143748 |
Product | GGDEF domain-containing protein |
Protein accession | NP_742536 |
Protein GI | 26987111 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0652441 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGAGACC TCAGCGTCTT TTTCACATCG CTGTTCAATG TCCTGCCTAC CTTGGTTCTG CTGCTGGGTG GCGCCTACTG CGCGGTATAC CGCCGTCAGC GTGAGCTGTT CCTGATGCTG ACGGTGTACA TCGCCTACTT TCTGCTCGAT ACCCAGACCG ACTTCTACCG TGACCATGGC CGCGTGCGTG AGGACGCCGC GGTGATCTTC CACCTTGTCT GCCTGTTGCT GCCGGCGCTG TTCGGGCTGT ATGGCGCCTG GCAGGAGCGT ACGCACCTGC TGCAGGACCT GGTCGCCCGC GGTGCGGTGC TGTTTGCCGT GGGCAGTGTG GCGGTGGCCC TCCAGCAAAG CTACCCCGAG GCGTTGCTGA CCTGGTTGGC GGAGATCCGC TGGCCGGCTT TGCATGGCCA CTGGATGAGC CTGATCCAGA TGGTCTACCC GCTGTTCCTG GGTGTGTTCA TTCTGCTGGT GGTGCAGTAC CTGCGTGCAC CCCGGCCGCT GCACGCCGCG CAGTTGATCG GCCTGCTGGG CATTTTCTGG ATGCTGCCGC AGACCTTCAT CCTGCCGTTT ACCTTGAACA TCATGTGCAG CCAGGTGATG TTGATGATCG CCGCAGCAGT GGCGCACGAG GCTTATCAGA TGGCCTTCCG TGACGAGCTG ACTGGCCTGC CGGGGCGCCG TGCGCTGAAC GAGCGCATGC AGCGCCTGGG GCGTAACTAT GTGATCGCCA TGACCGATGT CGACCACTTC AAGAAATTCA ATGACACCCA CGGCCACGAT GTCGGTGACC AGGTGCTGCG GTTGGTCGCC AGCCGCTTGT CCAAGGTCAC CGGCGGTGGC CGTGCCTACC GTTATGGCGG GGAGGAGTTC GCCCTGGTGT TCGCCGGCAA GACCGCCGCG GAATGCGTGC CGCATGTGGA AGCCGTGCGT GAAGTGATCG CCAATTACGT GATGCACCTG CGCGATCAGC ACAACCGCCC GCAGGACGAT ACCGCCGGGC GCCAGCGCCG GGCTGGCAGC GCCGGCGGCA CGGTCTCGGT CACCATCAGT ATCGGCGTGG CCGAGCGCCA GGCCGATCAT CGCAACCCCG AGGCGGTGCT GAAATCCGCC GACCAGGCGC TTTACAGTGC CAAAGGCGCG GGGCGCAATT GTGTCATGGT GCATGGGCGA CAATCACCGC GTGGGGCAGT GCGTACGGCG TGA
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Protein sequence | MRDLSVFFTS LFNVLPTLVL LLGGAYCAVY RRQRELFLML TVYIAYFLLD TQTDFYRDHG RVREDAAVIF HLVCLLLPAL FGLYGAWQER THLLQDLVAR GAVLFAVGSV AVALQQSYPE ALLTWLAEIR WPALHGHWMS LIQMVYPLFL GVFILLVVQY LRAPRPLHAA QLIGLLGIFW MLPQTFILPF TLNIMCSQVM LMIAAAVAHE AYQMAFRDEL TGLPGRRALN ERMQRLGRNY VIAMTDVDHF KKFNDTHGHD VGDQVLRLVA SRLSKVTGGG RAYRYGGEEF ALVFAGKTAA ECVPHVEAVR EVIANYVMHL RDQHNRPQDD TAGRQRRAGS AGGTVSVTIS IGVAERQADH RNPEAVLKSA DQALYSAKGA GRNCVMVHGR QSPRGAVRTA
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