Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0315 |
Symbol | |
ID | 1044010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 378120 |
End bp | 379412 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637143694 |
Product | Rieske (2Fe-2S) domain protein |
Protein accession | NP_742482 |
Protein GI | 26987057 |
COG category | [P] Inorganic ion transport and metabolism [R] General function prediction only |
COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.276992 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000264373 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGACGTCA CCGCAACCCT GAGCCTGGGC GATCCACTTG AACCCGCACG CAAGGCTACC GCCGAGATGT TGCAGACCCG CGAGCGCACC TACTCGCTGC CCCAGCCTTT CTACACCGAC GAGCGTCTGT TCCAGATCGA CATGCAGGAG ATCTTCCATA AAGAATGGTT GATCGCCGGC ATGACCTGCG AGATCCCGGC CAAGGGCAAC TACATCACCC TGCAGATCGG CAAGAATCCG ATCATTGTGG TGCGCGGTGC CGAAGGCAAG GTGCATGCCT TCCACAACGT CTGCCGCCAC CGCGGTTCGC GCCTGTGCGT CAGCGAGAAA GGCAAGGTGG CCAAACTGGT GTGCCCATAT CACCAGTGGA CTTACGAGCT GGACGGCCGC CTGCTGTTCG CCGGCACCGA GATGGGTGCT GACTTCGATA TGAACCAGTA CGGCCTCAAG CCCGTGAACG TGAAGGTGGC CGGCGGCTAC ATCTTCATCA GCCTGGCGGA AAACCCGCCT GCCATCGACG AGTTCCTGGC CACCCTGGAC CATTACATGG AACCGTACGA CATGGAGAAC ACCAAGGTGG CGGTGCAAAC TACCTTGATG GAAAAGGCCA ACTGGAAACT GGTGCTGGAA AACAACCGCG AGTGCTACCA CTGCAACGGT TCGCACCCGG AACTGCTGCA AACCCTGCTG GAGTGGGACG ACACCAACGA CCCGCGCGCC AGCCAGGAAT TCAAGGACCA TGTGGCCGCC TCCGCCGCTG CCTGGGAAGC CGAGAAGATC CCGTACCTGC ACAAGAGCCA CGGCCTGCGT AACCGCATCG TGCGCATGCC GCTGCTCAAG GGCACCGTGT CGATGACCAT GGACGGCAAG CAGGCCTGCC AGAAGCTGAT GGGTCGCATC AAGAACCCAG ACCTTGGCTC GATGCGCATC CTGCACCTGC CGCACTCGTG GAACCACTGC ATGGGCGACC ACATGATCGT GTTCACCGTG TGGCCGATCA GCGCCCAGGA AACCATGGTC ACCACCAAGT GGCTGGTGCA CAAGGATGCC GTGGAAGGTG TGGACTACAA CCCCGAGAAC ATGCGCAAGG TGTGGGACGC CACCAACGAC CAGGACCGCC GTCTGGCCGA AGAGAACCAG CGTGGGATCA ACTCCACGGC GTACCAGCCG GGCCCGTATT CGAAGACTTA CGAGTTTGGT GTGGTGAACT TCATTGACTG GTACAGCGGG CGCGTGCTGA ACAACCTGGG GGCAGAGCCG GCGCCATACC TGAAAGAAGT GCAGGCGCAG TAG
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Protein sequence | MDVTATLSLG DPLEPARKAT AEMLQTRERT YSLPQPFYTD ERLFQIDMQE IFHKEWLIAG MTCEIPAKGN YITLQIGKNP IIVVRGAEGK VHAFHNVCRH RGSRLCVSEK GKVAKLVCPY HQWTYELDGR LLFAGTEMGA DFDMNQYGLK PVNVKVAGGY IFISLAENPP AIDEFLATLD HYMEPYDMEN TKVAVQTTLM EKANWKLVLE NNRECYHCNG SHPELLQTLL EWDDTNDPRA SQEFKDHVAA SAAAWEAEKI PYLHKSHGLR NRIVRMPLLK GTVSMTMDGK QACQKLMGRI KNPDLGSMRI LHLPHSWNHC MGDHMIVFTV WPISAQETMV TTKWLVHKDA VEGVDYNPEN MRKVWDATND QDRRLAEENQ RGINSTAYQP GPYSKTYEFG VVNFIDWYSG RVLNNLGAEP APYLKEVQAQ
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