Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0284 |
Symbol | |
ID | 1043911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 341482 |
End bp | 342867 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637143662 |
Product | GABA permease |
Protein accession | NP_742451 |
Protein GI | 26987026 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.466033 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000157703 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCGGTA ACAATTCCAA TGACCTCGCT CAGGGGCTCA AACAACGGCA TGTGACCATG CTGTCCATCG CTGGCGTCAT CGGTGCCGGC CTGTTCGTAG GCTCCGGCCA CGCCATCGCA GCGGCCGGCC CTGCCGTGCT GCTGGCTTAC GCTGCCGCCG GTACGCTGGT CGTGCTGGTG ATGCGTATGT TGGGTGAAAT GGCAGTCGCC TCGCCTGACA CCGGTTCGTT CTCTACGTAT GCCGACCGCG CCATCGGGCG CTGGGCCGGT TTCACCATTG GCTGGCTGTA CTGGTGGTTC TGGGTGCTGG TGATTCCGCT GGAGGCCAAC GCCGCCGCAG CCATTCTGCA TGCCTGGTTC CCGGCGGTTG ACCTGTGGGC GTTCTCCCTC ATCATTACCC TGGCACTGAC ACTCACCAAC CTGTGCAGCG TGAAGAACTA CGGTGAGTTC GAGTTCTGGT TTGCCCTGCT CAAAGTGCTG GCGATCATCG GCTTCATCGC CGTGGGCTGT GCTGCCTTGT TCGGCTTTGT ACCGAGCAGC CAGGTGAGCG GTACCAGCCA CCTGTTCGAT ACCCAGGGCT TCATGCCCAA CGGCCTGGGC GCGGTGCTGG CAGCCATGCT GACCACCATG TTCTCGTTCA TGGGTACCGA AATCGTCACC ATCGCCGCTG CCGAGTCGAA GGACCCGGGC AAGCAGATCA GCCGTGCCAC CAACTCGGTA ATCTGGCGTA TCTGCCTGTT CTACCTGGTA TCGATCTTCC TGGTCGTGGC CCTGGTGCCG TGGAACGACC CGGCCCTGGC CGAGACGGGC TCCTACCAGA CCGTGCTGAG CCGTATCGGT GTGCCGAATG CCAAGCTGAT CGTCGACATT GTCGTGCTGA TTGCCGTGAC CAGCTGCCTG AACTCGGCGT TGTACACTTC TTCGCGCATG TTGTTCTCGC TGAGCAAGCG TGGCGACGCC CCGGCCATCG CCCAGCGCAC CACCAAGGCG GCGACCCCGC ACGTGGCGGT ACTGCTGTCC ACCGCAGCGG CATTCCTTTG CGTGTTCGCC AACTTCGTGG CACCGGCCCA GGTGTTCGAG TTCCTGCTGG CCAGCTCTGG CGCCATCGCG CTGCTGGTGT ACCTGGTGAT TGCCGTTTCG CAGCTGCGCA TGCGCGCCCA GCGTGAAGCC CGCGGCGAGA AGATCACCTT CAAGATGTGG CTGTTCCCGG GCCTGACCTG GGCGACCATT GCCTTCATCG TTGCCATTCT GGTGGTCATG GCGCTGCGTG AGGATCACCG TGCGGAGATC ATTGCGACTG CGCTGCTGAG TATTGGTGTG GTGGCGGCTG GCTTGCTGGT GCACCGCAAG CGCGAGGCTG CCGGGCGGGC GGCGCTGGAC AGCTGA
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Protein sequence | MSGNNSNDLA QGLKQRHVTM LSIAGVIGAG LFVGSGHAIA AAGPAVLLAY AAAGTLVVLV MRMLGEMAVA SPDTGSFSTY ADRAIGRWAG FTIGWLYWWF WVLVIPLEAN AAAAILHAWF PAVDLWAFSL IITLALTLTN LCSVKNYGEF EFWFALLKVL AIIGFIAVGC AALFGFVPSS QVSGTSHLFD TQGFMPNGLG AVLAAMLTTM FSFMGTEIVT IAAAESKDPG KQISRATNSV IWRICLFYLV SIFLVVALVP WNDPALAETG SYQTVLSRIG VPNAKLIVDI VVLIAVTSCL NSALYTSSRM LFSLSKRGDA PAIAQRTTKA ATPHVAVLLS TAAAFLCVFA NFVAPAQVFE FLLASSGAIA LLVYLVIAVS QLRMRAQREA RGEKITFKMW LFPGLTWATI AFIVAILVVM ALREDHRAEI IATALLSIGV VAAGLLVHRK REAAGRAALD S
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