| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0245 |
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| Symbol | |
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| ID | 1043816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 298539 |
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| End bp | 301124 |
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| Gene Length | 2586 bp |
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| Protein Length | 861 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637143623 |
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| Product | S1 RNA-binding domain-containing protein |
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| Protein accession | NP_742413 |
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| Protein GI | 26986988 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.409954 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0128243 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAATCT TGTCACCTTC AGCGGTGTTT GGCGTGCCGG TCATGAATAA CTCCTCTGAT
ATCGCCGCGC ATTATGGCGT AGCCATTGCT GCACGTTGCG TGAGCATTGT TAGCAGATTT
TTCCCCCGGC GCCAGTTCCG GCTGGCCGGG CGCCATCACC GCAAGCCGTT TGCGATGGGT
ATAATGCGCG GCTTTCATCC AGCGCCGCCG GGCAAAAAGC CCACAGGCGA CCCCCGTATT
CACAAATGTC AGGTGGTTTA CATGGACAGC ATCAACAGCC GTATCGCCGA GGAACTGGGC
GTACGCCCGC AGCAGGTCGA GGCGGCCGTG AGCCTGTTGG ACGAAGGCTC GACCGTGCCC
TTCATCGCCC GCTATCGCAA GGAAGTGACC GGTAGCCTTG ACGACACTCA GTTGCGCCAC
CTGGAAGAGC GCCTGCGCTA CCTGCGCGAA CTCGACGAGC GCCGCGCCAG CATCCTTTCC
AGCATCGAGG AACAGGGCAA GCTGACCCCG GAACTGGCCC GCGAGATCAA GCTGGCCGAC
ACCAAGACCC GCCTCGAAGA CCTGTACCTG CCGTACAAGC AGAAGCGCCG CACCAAGGGC
CAGATCGCCC TGGAAGCCGG CCTTGGCGAA CTGGCCGATG GCCTGTTCAA CGACCCGACC
CTGGCCCCGG AAAGCGAAGC CGCACGCTTC GTCAACGCCG AAAAGGGCGT GGCCGACGTC
AAGGCCGCGC TGGAAGGCGC CAAGTACATC CTGATGGAGC GCTTTGCCGA AGACGCCGCC
CTGCTCGACA AGCTGCGCAG CTACCTCAAG CAGGAAGCCG TGCTCAGCGC CCGCGTCGTG
GCCGGCAAGG AAGAAGAAGG CGCCAAGTTC CGCGACTACT TCGCTCATGA CGAGCTGCTG
CGTACTGCGC CATCGCACCG TGCCCTGGCG ATCTTCCGCG GGCGCAACGA AGGCGTGTTG
AGCGTCTCGC TGAAGGTCGG CGAAGAACTG CCCGGCACCC TGCACCCATG CGAGCTGATG
ATCGGCAACC ACGTCGGCAT CGAGAACCGC AGCCGGCCGG CCGACAAGTG GCTGGGTGAA
GTGGTGCGCT GGACCTGGAA GGTCAAGCTG TACACCCACC TGGAAACCGA CCTGTTCGGC
GAGCTGCGCG ACAGTGCCGA AGGCGAGGCG ATCAATGTGT TCGCCCACAA CCTGCATGAC
CTGCTGCTGG CCGCCCCGGC CGGCCCCCGC GCCACCCTGG GCTTCGACCC GGGCCTGCGC
ACCGGCTGCA AGATCGCCGT GGTCGACGCA ACCGGCAAAC TGCTGGACCA CACCACGGTC
TACCCGCACG CGCCGAAGAA CGACTGGGAC CGCACCATTT CCATCATGGC CGCACTGTGC
GCCAAACACT CGGTGGAGCT GATCGCCATT GGCAACGGTA CCGCCAGCCG CGAAAGCGAC
AAGCTGGTGA CCGAGTTGGT CAAGAAATAT CCCGCCCTGA AAATCACCAA GATCATGGTT
TCCGAAGCCG GCGCTTCGGT GTACTCGGCA TCGGAATTGG CCGCCCGCGA GTTCCCGGAC
CTGGACGTGT CGATCCGCGG CGCCGTGTCG ATCGCCCGAC GCCTGCAGGA TCCGCTGGCC
GAACTGGTGA AGATCGATCC GAAATCCATC GGTGTCGGCC AGTACCAGCA CGACGTGTCC
CAACTGAAAC TGGCACGTGG CCTGGACGCG GTAGTCGAGG ACTGTGTGAA CGCCGTGGGC
GTGGACGTGA ACACCGCTTC GGTGGCGCTG CTGACGCGCA TCTCCGGCCT CAATGCCACC
CTGGCACAGA ACATCGTCGC CCACCGCGAT GCCAATGGTC CGTTTGCCAC CCGGGCAGCG
TTGAAAAAGG TCAGCCGCCT GGGTGAGAAA ACCTTCGAGC AGGCCGCCGG CTTCCTGCGC
GTGATGAACG GCGACAACCC GCTGGACGCC TCTGCGGTGC ACCCTGAGGC CTATCCACTG
GTGCAGCGCA TTGCTGCCGA TACCGACCGC GACATCCGCT CGCTGATTGG TGACAGCAGC
TTCCTCAAGC GCCTGGACCC GAAAAAGTTC ACCGACGAAA CCTTCGGCCT GCCAACCGTC
ACCGACATCC TGCAAGAGCT GGACAAGCCC GGCCGCGACC CACGTCCGGA GTTCAAGACC
GCCACCTTCC AGGACGGCGT CGAAGACCTC AAGGACCTGG AACCGGGCAT GATCCTCGAA
GGCGTGGTGA CCAACGTTAC CAACTTCGGT GCCTTCGTCG ACATCGGCGT GCATCAGGAC
GGCCTGGTGC ATATCTCGGC GCTGTCGGAG AAGTTCGTCA AAGACCCGCG TGAGGCGGTC
AAGGCCGGCG ATGTGGTCAA GGTCAAGGTC ATGGAAGTGG ACATCCCGCG CAAACGCGTC
GGCCTGTCCA TGCGCATGAG CGACACCCCG GGCGAGAAGG TCGAAGGCAA CCGCGGTGGT
AATCGTGGCA ATGGCGGCAA TCGCCAGCAG CAGGCACCGC GTCAGCGCGA AACCGCCACC
GCAGCCCCGG CCAACAACGC CATGGCCGCC CTGTTCGCCA ACGCCAAGCA ACTGAAGAAG
AAGTAA
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| Protein sequence | MRILSPSAVF GVPVMNNSSD IAAHYGVAIA ARCVSIVSRF FPRRQFRLAG RHHRKPFAMG
IMRGFHPAPP GKKPTGDPRI HKCQVVYMDS INSRIAEELG VRPQQVEAAV SLLDEGSTVP
FIARYRKEVT GSLDDTQLRH LEERLRYLRE LDERRASILS SIEEQGKLTP ELAREIKLAD
TKTRLEDLYL PYKQKRRTKG QIALEAGLGE LADGLFNDPT LAPESEAARF VNAEKGVADV
KAALEGAKYI LMERFAEDAA LLDKLRSYLK QEAVLSARVV AGKEEEGAKF RDYFAHDELL
RTAPSHRALA IFRGRNEGVL SVSLKVGEEL PGTLHPCELM IGNHVGIENR SRPADKWLGE
VVRWTWKVKL YTHLETDLFG ELRDSAEGEA INVFAHNLHD LLLAAPAGPR ATLGFDPGLR
TGCKIAVVDA TGKLLDHTTV YPHAPKNDWD RTISIMAALC AKHSVELIAI GNGTASRESD
KLVTELVKKY PALKITKIMV SEAGASVYSA SELAAREFPD LDVSIRGAVS IARRLQDPLA
ELVKIDPKSI GVGQYQHDVS QLKLARGLDA VVEDCVNAVG VDVNTASVAL LTRISGLNAT
LAQNIVAHRD ANGPFATRAA LKKVSRLGEK TFEQAAGFLR VMNGDNPLDA SAVHPEAYPL
VQRIAADTDR DIRSLIGDSS FLKRLDPKKF TDETFGLPTV TDILQELDKP GRDPRPEFKT
ATFQDGVEDL KDLEPGMILE GVVTNVTNFG AFVDIGVHQD GLVHISALSE KFVKDPREAV
KAGDVVKVKV MEVDIPRKRV GLSMRMSDTP GEKVEGNRGG NRGNGGNRQQ QAPRQRETAT
AAPANNAMAA LFANAKQLKK K
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