Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0167 |
Symbol | |
ID | 1043691 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 191360 |
End bp | 193516 |
Gene Length | 2157 bp |
Protein Length | 718 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637143545 |
Product | toxin secretion ATP-binding protein |
Protein accession | NP_742336 |
Protein GI | 26986911 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00008239 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGGAATCCG AAGTCAGTCG AGTCCAACTC AGCCACGATC CACGCAGTCA GCATGACGAT CCCCTGCTGG ATAGTCTGCT GAGCCTGTGT GTCCTGCACC AGAAGCCCGC CAGCCGGGTC ATGCTGACAA CAGGCCTACC GCTACCCGCC CAGCGCCTGA GCCCTGAACT GCTGCCGCGC GCCGCGGCCC GGGCTGGCCT GCAGGGGCGC CTGCTTCAGC GAAAGCTGGA GCAGATCCCG AGTATCGCCA TGCCGGCCAT GCTGCTGCTC AAGGAGGGCC GCAGCGCCGT CCTGCTCGGC TGGGAGAACG ATGACACCGC GCGCCTGCTA CTCAGCGAGA GCGACGGTGG CGAGGTGCAT GTCAGCCGCG AAGCCCTGCT AAGCGACTAC AGCGGCCGCG TGTTCTTCGC GCAGCCGCAG CACAAGTTCG ATGTCAACCA CGGCAACCTC ATCCCACGAG CGAAGTCGTG GTTCCGCGAC ACCCTGCTGC GCAGCAAGTG GTTGTATATC GACGCCATCG CCGCCAGCCT GGTGATCAAC CTGATCGCCT TGGCCGCGCC GCTGTTCGTG ATGAACGTGT ATGACCGAGT GGTGCCAAAC CAGGCCACCT CGACGCTCTG GGTACTGGCC ATCGGTATCG CCGGCGCGTA TATCTTCGAC CTGATCCTCA AAGGCCTTCG CGGCCTGTGC CTGGACCTGG CCGGCAAGAA GACCGACCTG ATCATCTCGG CAACGCTGTT TGAACGTATC GTCGGCATGT CGATGAAGTA CCGGCCGGCG CGGGTAGGCA GCTTTGCCCA GAACATTCAC GAGTTCCAGG GCCTGCGCGA CTTCCTCGCC TCGCTGACCC TGACCAGCCT GATCGACCTG CCCTTTACCA TCCTGATTTT GATCGTCATC GCCATCATTG GCGGGCACCT GGTGTGGATA CCGATCATCG CCTTCCCGCT GGCTCTGGGC ATCGGCTACG CCCTGCAGCG GCCACTGATG GCGACCATGG AGCGGACCAT GGCTTTGGCA TCAGAGCGCC AGTCCAGCCT GATCGAAACC CTGGCGGGTC TGGATGCGGT AAAGGTCAAC AACGCCGAAA GCGAACGCCA GTATATGTGG GAGCAAACCC TCGGCACCCT GAGCCGGCTG GAACTGCGCG TGAAAGTGCT GTCGAGCCTG GCGATGAACA TCACCCTGCT GATCCAGCAA CTGGCAGGCG TGGCAATGAT CTGCGTCGGC GTGTACCTGA TCATCGACGG CAACCTGAGC ATGGGCGGCC TGGTGGCTTG CTACATGCTC AGCGGCCGTG CCCTCGGCCC GTTGGGCCAG CTCAACGGCC TGCTGGCCCG CTACCAGCAA GCCAAGGTGA CCATGGTCTC CACCGACCAC ATGATGGATC TACCGCAAGA GCGCAACTTC GAAGAACGCC CGCTGAGCCG CAAGGTGCTG CAGGGCAGCG TCGAGTTCCG CGGGGTCGAC TTCACTTATC CGAACCAGCA GAACCTGGCC CTGAAGAATA TCAACCTGAC CATCCGCCCT GGCGAGAAGG TCGGCATCAT CGGCCGCAGC GGCTCCGGCA AGAGCTCGCT GGCCAAGCTC ATCGTCGGCC TGTACGAGGC CGATGGTGGC TCGCTGCTGG TTGATGGCGT CGACATTCGC CAGATCGATG TCAGCGAACT GCGCCACAAC ATCGGCTACG TCCCCCAGGA TATCCAGCTG CTGGCCGGCA CCTTGCGTGA CAACCTGGTC AGCGGCGCCC GCTACATCGA GGACGAATTG ATCCTGCAGG CCGCTGAACT GGCGGGCGTA CATGAATTCG CCCGGCTGCA CCCCGACGGC TACGAGCTGC AAGTGGGTGA ACGCGGGCAA AACCTGTCCG GCGGCCAGCG GCAGAACGTC GCCTTGGGCC GTGCGCTGCT GCTCAACCCG CAGATCCTGC TGCTGGACGA GCCGACCAGC GCCATGGACA ACACCGGTGA AGAACGCCTC AAGCAGCGCC TGCAAGCGGT GGTGGAGGGC AAGACGGTAC TGCTGGTCAC GCACCGTGCC TCATTGCTGT CGCTGGTAGA CCGGCTGATC GTGATCGATC GCGGGCAGAT TGTCGCCGAC GGCCCGAAAG CCGCGGTCAT GGATGCACTG AAGAAGGGGC AGATCAGTGT TGCATAA
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Protein sequence | MESEVSRVQL SHDPRSQHDD PLLDSLLSLC VLHQKPASRV MLTTGLPLPA QRLSPELLPR AAARAGLQGR LLQRKLEQIP SIAMPAMLLL KEGRSAVLLG WENDDTARLL LSESDGGEVH VSREALLSDY SGRVFFAQPQ HKFDVNHGNL IPRAKSWFRD TLLRSKWLYI DAIAASLVIN LIALAAPLFV MNVYDRVVPN QATSTLWVLA IGIAGAYIFD LILKGLRGLC LDLAGKKTDL IISATLFERI VGMSMKYRPA RVGSFAQNIH EFQGLRDFLA SLTLTSLIDL PFTILILIVI AIIGGHLVWI PIIAFPLALG IGYALQRPLM ATMERTMALA SERQSSLIET LAGLDAVKVN NAESERQYMW EQTLGTLSRL ELRVKVLSSL AMNITLLIQQ LAGVAMICVG VYLIIDGNLS MGGLVACYML SGRALGPLGQ LNGLLARYQQ AKVTMVSTDH MMDLPQERNF EERPLSRKVL QGSVEFRGVD FTYPNQQNLA LKNINLTIRP GEKVGIIGRS GSGKSSLAKL IVGLYEADGG SLLVDGVDIR QIDVSELRHN IGYVPQDIQL LAGTLRDNLV SGARYIEDEL ILQAAELAGV HEFARLHPDG YELQVGERGQ NLSGGQRQNV ALGRALLLNP QILLLDEPTS AMDNTGEERL KQRLQAVVEG KTVLLVTHRA SLLSLVDRLI VIDRGQIVAD GPKAAVMDAL KKGQISVA
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