Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0139 |
Symbol | |
ID | 1043642 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 147453 |
End bp | 148088 |
Gene Length | 636 bp |
Protein Length | 211 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637143511 |
Product | putative lipoprotein |
Protein accession | NP_742309 |
Protein GI | 26986884 |
COG category | [R] General function prediction only |
COG ID | [COG3218] ABC-type uncharacterized transport system, auxiliary component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.646492 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCGT CGCTGCGCCT GCTGACCCTG GCGGCCTCGC TGAGCCTGGC CAGTGCCTGC TCGATCCTGC CGCAGAGCGA ACCTGTGGAT CATTATCGCC TGCCGGTGAA CCAGCCCAGC CGCACAGCGC CGCCGCTGGA CTGGTCATTG CGCCTGAACA AGCCGCTGGC CAGTGAAGTG TTGGCCGGGC CAAGGATTGC CGTGGTTCCC CAGGGCAATG TGGTGAGCAG CTACAAGGGC GCGCGCTGGA GCGATGCGGC CCCGGTGCTG CTGCGTAACC GCTTGCTCGA CGGGTTCCAG CGTGAGGGCC AGGTACAGCG CCTGAGCGCT GACGACAGTA ACCTGCAGGC AGACTACGAA CTGGCCGGCG AGCTGCAGGC CTTTCAGAGT GAATACCGCA CGGATGGGGC AGTGGAGGTG GTGATCCGCT ATGACGCTCG CTTGGTCCAG GGCCGCAACC AACGCATCCT GGCCAGCAAG CGCTTCGAAA TCCGCCAACC GCTGGACGAC AAACAGGTAT CAGCAGTGGT CGCCGGCTTC GGCCAGGCCA GCGACCAGCT GGTGGGGCAA GTCGTGAACT GGACCATCAC CCAGGCCAAT CAGGCACAAC TGAAGCTTCA GGCAAAGAAC CAGTAG
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Protein sequence | MNPSLRLLTL AASLSLASAC SILPQSEPVD HYRLPVNQPS RTAPPLDWSL RLNKPLASEV LAGPRIAVVP QGNVVSSYKG ARWSDAAPVL LRNRLLDGFQ REGQVQRLSA DDSNLQADYE LAGELQAFQS EYRTDGAVEV VIRYDARLVQ GRNQRILASK RFEIRQPLDD KQVSAVVAGF GQASDQLVGQ VVNWTITQAN QAQLKLQAKN Q
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