| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0129 |
|---|
| Symbol | |
|---|
| ID | 1043626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 134104 |
|---|
| End bp | 136041 |
|---|
| Gene Length | 1938 bp |
|---|
| Protein Length | 645 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637143501 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | NP_742299 |
|---|
| Protein GI | 26986874 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAG ACGCTGAGCG CTGGAAAGAA AAATACCTTA AAAGCATCGA GCAGCAAGAA
AAGCTCGAGC GCCGTTGGGA TGCCCGTCTT GACCTGTTGC GCCGAGGCCT GGTGCGCAGC
ACCCTGGCTG CTGAAGGCAG TGACAAGGTG GTAGACGAGT GCATGAAGGA AATGCGCGAT
GTCATTCGCA GCGACAACAT GGACGCCGGC CTCGCTGGCT TGATTCCGCG CCTTGAGAAA
GCGGTACTGG ATTCCGAACA GCGTCGCGAA ACCCGCATGA ACCAGGTCAG CGATGCGCTG
ACCGCACTGG TTGGCCAACT GCAAGGCCTG CCCCTGCCCA GCGATATCTC GCGGCCATTG
AAAAAACTGG CGAAGAAGCT CGAGGGCGGG GTTGCCCAGT CACGCGAGCT GCCGCCGCTG
TTGGGCGAGT TGAGCGGCTT GCAGGGGCGC GCGCTGTCGG CCCTTGGCAA GCCGAGTGAA
GAAGCCCGAC CCGGTTTTCT GCAGCGGTTG TTTGGAAGCC GCGAGGAAGA TGCACAGGCA
GGAGCAGAGC TTGCGCCGGT AGCGTTACCT GCTGCCGAGG TTGTACCCCA GGCAGCCGGC
AGTGCCGAGC CCTCGCGGCA CGATGACGTC GATGCGCTAC AACCGTTGCC GGCCCCTGCT
GTTCCGACTG CCGAGGTGGC CGAAGCGCCC GAGCTTGAGC TGGAGGCATT TGGCCCGGCG
CTGATCGAAA CGGCCGAAAT GCCGCCAGCC CCGTTGCCAA GGGACAAGAC GCCATTGCCG
GAAGCTGAAG TTTCCGCCAG CGAGTCGTTG GCTGAGGCAG AACCCTTACA AGCCCTTGAA
GAAACCTTTG GTGAAGACGG CCCCTATGCC CTGCCCTACG CAGTGGAGCC GCCTTACAGC
CAGGTTGCCG CGCACATCGA GCAGACCCTG ATCGGTCTGC TCGATGACCT CAGCCTGCCC
GAGCGACACA AGGCTCAGGC GCAGGAAATG CGCGAGCGGG TTGCTCGCGG CTTGAACTGG
TATGAACTGA TCCCGGTGCT GGATGACTTG GCAGTACTCA TGCTGGCGAT CACCGACAGC
GGGCAGCACG AATTCGAAAC CTACCTGCAG CAGCTCAATG AACGCCTGGA AGGTTTCCAG
AGCCACCTGC ACGAGGCCAG CGCCGGCCAC GCGGACAATA GCACCGCTGC CCGCGAGCTG
GATAGCCAAC TGCGTGAGCA CGTCGACGGC CTGCAGAGCA GCGTGCAAGG TGCCGCCGAT
GTAGACAGCC TCAAGCACAT TCTGGAAAAC CGCCTGGAAG GCTTGCTGGT GACGATGGAC
GAGCACAAGC ACGAGCGTGA TCGCCGCGAG CAGGAACTGG CCGGTCGCCT GCAAGGCTTG
TCGGAGCGGG TGGCGAGCAT GGAGCATGAG GCGCTTGGCT ATCGCGAGCA CCTGGAAGAA
CAGCGCCAGA AAGCCCTGCT GGACCCGCTC ACCGGCCTGC CCAACCGTGC GGCCTGGAGC
GAGCGAGTCG AACGCGAAAT GCTTGACTGG CAGGAAAACG GCGGCCATCT GGCGATGGCG
ATTCTTGATC TGGACCATTT CAAACGCATC AACGACAACT ATGGTCATCT GGCTGGGGAC
AAGGTCCTCA AGATCGTGGC CGACCAGTTG CGCAAGCGTC TGCGGGGCCG TGATTTCATC
GCCCGTTTTG GCGGCGAGGA ATTCGTCATG CTGCTGCCGC AGACTACGCC CGCAGTCGCT
GCGCAAGTGG CCGAGGTGTT GCGTGCCACA GTCGAAGCCT GCCCATTCCA CTTCAAGGGA
GAACGGGTGG TGATCACCAC CTCCATCGGC CTGGGTGCAT TCCGTTCTGG CGAACGCAGC
GACCAGGTGC TCAAAAGGGC CGATGCAGCG CTGTACCGGG CAAAGGAGCT GGGGCGTAAT
CGCGTCGAGC ATGGTTAG
|
|---|
| Protein sequence | MTEDAERWKE KYLKSIEQQE KLERRWDARL DLLRRGLVRS TLAAEGSDKV VDECMKEMRD
VIRSDNMDAG LAGLIPRLEK AVLDSEQRRE TRMNQVSDAL TALVGQLQGL PLPSDISRPL
KKLAKKLEGG VAQSRELPPL LGELSGLQGR ALSALGKPSE EARPGFLQRL FGSREEDAQA
GAELAPVALP AAEVVPQAAG SAEPSRHDDV DALQPLPAPA VPTAEVAEAP ELELEAFGPA
LIETAEMPPA PLPRDKTPLP EAEVSASESL AEAEPLQALE ETFGEDGPYA LPYAVEPPYS
QVAAHIEQTL IGLLDDLSLP ERHKAQAQEM RERVARGLNW YELIPVLDDL AVLMLAITDS
GQHEFETYLQ QLNERLEGFQ SHLHEASAGH ADNSTAAREL DSQLREHVDG LQSSVQGAAD
VDSLKHILEN RLEGLLVTMD EHKHERDRRE QELAGRLQGL SERVASMEHE ALGYREHLEE
QRQKALLDPL TGLPNRAAWS ERVEREMLDW QENGGHLAMA ILDLDHFKRI NDNYGHLAGD
KVLKIVADQL RKRLRGRDFI ARFGGEEFVM LLPQTTPAVA AQVAEVLRAT VEACPFHFKG
ERVVITTSIG LGAFRSGERS DQVLKRADAA LYRAKELGRN RVEHG
|
|---|
| |