Gene PP_0103 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0103 
Symbol 
ID1043588 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp108809 
End bp109936 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content61% 
IMG OID637143475 
Productcytochrome c oxidase, subunit II 
Protein accessionNP_742273 
Protein GI26986848 
COG category[C] Energy production and conversion 
COG ID[COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2
[COG2010] Cytochrome c, mono- and diheme variants 
TIGRFAM ID[TIGR02866] cytochrome c oxidase, subunit II 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.193198 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCGAC ATCCACATGT CTGGATGGGC CTCCTGTTGT GGTCGGTTTT TGGTCAGGCC 
AACGCCGCCT GGACCGTGAA CATGCACCCA GGGGCGACGG AAGTCTCCAA CGCCGTCTTC
GACCTGCACA TGACCATCTT CTGGATCTGC GTGATCATTG GCATCGTGGT GTTTGGCGCG
ATGTTCTGGT CGATGGTCAT CCACCGCCGC TCCACTGGCC AGCAGGCCGC GCATTTCCAC
GAGCACACGT GGGTGGAAAT TCTCTGGACG GTGGTGCCCT TCCTGATTCT GGTGGTGATG
GCCATTCCGG CTACCAAGAC CCTGATCGAC ATCTATGACG CCAGCGAGTC GGACATCGAC
GTCCAGGTCA CCGGCTACCA GTGGAAATGG CACTACAAAT ACCTGGGCCA GGACGTGGAG
TTCTTCAGCA ACCTGGCCAC CCCCACCGAC CAGATCCACA ACAAGGCGCC AAAGGATGAG
CACTACCTGC TGGAAGTCGA CCAGCCGCTG GTGCTGCCGG TGGGCGCGAA AGTGCGCTTC
CTGGTCACTG CTGCCGATGT GATCCACTCC TGGTGGGTGC CGGCCTTCGC GGTCAAACGC
GACGCCATCC CAGGCTTTGT CAACGAAGCC TGGACCCGGA TCGAAAAGCC AGGCATCTAC
CGCGGCCAGT GCACCGAGCT GTGCGGCAAG GACCACGGCT TCATGCCGGT GGTGGTCGAG
GTCAAGTCCA AGGCGGATTA CGACACCTGG CTTGGCGAGC GCAAGGCTGA AGCCGCCAAG
CTCAAGGAGC TGACCAGCAA GGAATGGACC CTGGAAGAGC TGGTGGAGCG CGGCGACAAG
GTCTACCACA CCACCTGCGT GGCCTGTCAC CAGGCCGAAG GCCAGGGCCT GCCGCCAATG
TTCCCGGCGC TCAAAGGCTC GAAGATTGCC ACCGGGCCGA AGGAAGGCCA CCTGAGCATT
GTCTTCCATG GCAAGCCCGG CACGGCCATG GCCGCTTTCG GCAAGCAGCT GTCGGAAGTC
GACATCGCTG CTGTAGTCAC CTACGAGCGC AATGCCTGGG GCAACAACAA AGGCGACATG
GTGACGCCGA AGGACGTGCT GGCGCTGAAG CAGGCAGAAG CCAAGTGA
 
Protein sequence
MMRHPHVWMG LLLWSVFGQA NAAWTVNMHP GATEVSNAVF DLHMTIFWIC VIIGIVVFGA 
MFWSMVIHRR STGQQAAHFH EHTWVEILWT VVPFLILVVM AIPATKTLID IYDASESDID
VQVTGYQWKW HYKYLGQDVE FFSNLATPTD QIHNKAPKDE HYLLEVDQPL VLPVGAKVRF
LVTAADVIHS WWVPAFAVKR DAIPGFVNEA WTRIEKPGIY RGQCTELCGK DHGFMPVVVE
VKSKADYDTW LGERKAEAAK LKELTSKEWT LEELVERGDK VYHTTCVACH QAEGQGLPPM
FPALKGSKIA TGPKEGHLSI VFHGKPGTAM AAFGKQLSEV DIAAVVTYER NAWGNNKGDM
VTPKDVLALK QAEAK