| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_0613 |
|---|
| Symbol | |
|---|
| ID | 3765413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9312 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007577 |
|---|
| Strand | - |
|---|
| Start bp | 578414 |
|---|
| End bp | 579724 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637797134 |
|---|
| Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| Protein accession | YP_397110 |
|---|
| Protein GI | 78778998 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.85164 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATG TCCGCAAAAT AAAAGGTGGA AGTAATTTAA AAGGAAAAAT AAAAGTACCT
GGAGACAAAT CTATTTCTCA TAGAGCCTTG ATAATAGGAA GTATTGCGCA GGGTGAAACG
ACTATTGAGG GTTTTTTACA TTCTGAAGAT CCACTTTCAA CCGCTGATTG TCTTAGGAAA
TTAGGTGTAA ACATACCAGA CATAAAAGAA GATGAGCCTT TTACTATCTC AGGCTTGGGT
CTTGATGGAA TAAAAGAGCC TAAAGAAATT CTTAATTGTG GAAATTCAGG AACCACCATG
CGGTTATTAA TGGGATTACT AGCCGGTCAA GAAGGTAAAA ATTTTATCTT GACAGGGGAC
ACTTCTCTTA ATGAGAGGCC AATGGGTAGA GTGAACAAAC CATTATCTTT GATGGGTGGC
ATAATTTCTG GTAGAGAAAG CGGTAATAAA GCTCCAATCT CAATTTATGG AAATAAACTT
AAGGGATGTG TTATTGGAAC TCCTATAGCA AGCGCTCAAG TAAAATCGGC AATATTATTG
GCAGGCCTCA AAGCTTCTGG AACTACTTCT GTTATTGAGC CTGCATCTTC AAGAGATCAT
ACTGAAAGAA TGTTAAAAGC ATTTGGAGCG AACATAAGTA TTAGAGGAGA ATTAGGAAGG
AATGTAGTAA TAAAGTCAGG GGGTAATTTA ATTGGGCAGA GAATATTAAT CCCTGGAGAC
ATAAGCTCTG CATCCTTTTG GATGATTGCT GCATCTATTG TCCCAAATTC AGAGGTTTTA
ATTAAGAATG TTGGATTAAA TCCCACTAGA ACAGGGATAT TAAATGTAAT GGATTCAATG
GGCTGCAATT ATGAGATTTT AGATAAATCA ACGATTGCAG GAGAACCTAT TGGATCTATT
AAAGTAAAGA CCGCAAATAA TTTAAGATCA TTCACTATTG AAGGAGATAT TCTCCCAAAA
CTTATAGATG AAATTCCAAT CCTTACTGTG GCAGCATGTT TTTGTAATGG AGTGTCTGAA
ATTAAGGATG CACAGGAATT GAGATTTAAA GAAACAGACC GATTAAAAGT CATGGCAAGA
CAATTGAGCA AATTCGGTGC TGAAATAACA GAAAAAGAGG ATGGATTAAT AATTAATGGT
CAATCAAAAT TTCATTCTGC GGAAGTAGAC AGTGAGACAG ATCATCGAGT ATCAATGAGT
CTTGCGATAG CTTCACTTGT CGCCAAAGGT ACCTCAAAAA TTATGAGAGC AGATGCATCT
TACGTCTCAT ATCCATCTTT TTGGGAAGAC CTTGCCAAGT TAACTAACTA A
|
|---|
| Protein sequence | MNNVRKIKGG SNLKGKIKVP GDKSISHRAL IIGSIAQGET TIEGFLHSED PLSTADCLRK
LGVNIPDIKE DEPFTISGLG LDGIKEPKEI LNCGNSGTTM RLLMGLLAGQ EGKNFILTGD
TSLNERPMGR VNKPLSLMGG IISGRESGNK APISIYGNKL KGCVIGTPIA SAQVKSAILL
AGLKASGTTS VIEPASSRDH TERMLKAFGA NISIRGELGR NVVIKSGGNL IGQRILIPGD
ISSASFWMIA ASIVPNSEVL IKNVGLNPTR TGILNVMDSM GCNYEILDKS TIAGEPIGSI
KVKTANNLRS FTIEGDILPK LIDEIPILTV AACFCNGVSE IKDAQELRFK ETDRLKVMAR
QLSKFGAEIT EKEDGLIING QSKFHSAEVD SETDHRVSMS LAIASLVAKG TSKIMRADAS
YVSYPSFWED LAKLTN
|
|---|
| |