Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PMT9312_0006 |
Symbol | |
ID | 3764787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9312 |
Kingdom | Bacteria |
Replicon accession | NC_007577 |
Strand | - |
Start bp | 8435 |
End bp | 9298 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 27% |
IMG OID | 637796509 |
Product | TPR repeat-containing protein |
Protein accession | YP_396503 |
Protein GI | 78778391 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGT TTTTAAAAAA TATACTATGC GTCTCTTTGA TAAGTTTTTA CGTTCTTAAA ATAGAAAAAG TTCAATCAAT TATTCCCTAT TATTATTTCC CAACAATAAA AAATTTACAA AAGGAAAGCT TAGGCATTGG CAAGAATGCA TATCAACTTT TATATTTTGG ACAATATAAA GAAAGCCTTA ACTTAGCAAA ATTAGCTATA AAGATAAATC CTACAGATGA AAAACTATGG TTAATTTTTT CTGAAGCACA ACTAGCTAAC AAATTATACA AAAACGCATT AATTTCACTA GATAAAGCTC AAAAAATTAA TTCCAAGAAT CCTGAAACAT ACTTTGCTAA AAGTAATATT TATCTTAAAA TTTCACAACT ACAAAATGCG AAAACTGCTT TAGAAACTGC ATTAAGGATT GAATCAAACA ACTATAAAGC TATTTTTCAA TTAGGAAATA TTTTTTTAAT GGAAAAAAAT TACTCAGAAG CCATCAAATT ATTTGATAAA TCTGTCAAGA TTAAACCTGA TTTCTGGCAA GCAATCAATA ATCAAGGTTT AGCTTATTTC GAGAAAAACA ACATCAATCT ATCTATAAAA CTTTTTGAAA AAGCAATCTC AATTGATGAC AATGCAGAGC CATTACTAGG ACTTGCTTCG TGTTTAAGAA CAAAAGATAT TAAATTAGCT CTTCAAATAG CAAAAAGAGC TTTAAAGAAA AATCCCAACT ATGTTAATTA TGATTATAGA AAAGAACAGT TGTGGGGAGA AAAATTGCAA ACCTCAACGG AAATACTTTT AAAAAATGAT CAGCTTAAAA GAGATGTAAT ATTGGCAAAA TCAAAAATAA ATACATCTTC TTAA
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Protein sequence | MKKFLKNILC VSLISFYVLK IEKVQSIIPY YYFPTIKNLQ KESLGIGKNA YQLLYFGQYK ESLNLAKLAI KINPTDEKLW LIFSEAQLAN KLYKNALISL DKAQKINSKN PETYFAKSNI YLKISQLQNA KTALETALRI ESNNYKAIFQ LGNIFLMEKN YSEAIKLFDK SVKIKPDFWQ AINNQGLAYF EKNNINLSIK LFEKAISIDD NAEPLLGLAS CLRTKDIKLA LQIAKRALKK NPNYVNYDYR KEQLWGEKLQ TSTEILLKND QLKRDVILAK SKINTSS
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