Gene PMT9312_0006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_0006 
Symbol 
ID3764787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand
Start bp8435 
End bp9298 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content27% 
IMG OID637796509 
ProductTPR repeat-containing protein 
Protein accessionYP_396503 
Protein GI78778391 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAGT TTTTAAAAAA TATACTATGC GTCTCTTTGA TAAGTTTTTA CGTTCTTAAA 
ATAGAAAAAG TTCAATCAAT TATTCCCTAT TATTATTTCC CAACAATAAA AAATTTACAA
AAGGAAAGCT TAGGCATTGG CAAGAATGCA TATCAACTTT TATATTTTGG ACAATATAAA
GAAAGCCTTA ACTTAGCAAA ATTAGCTATA AAGATAAATC CTACAGATGA AAAACTATGG
TTAATTTTTT CTGAAGCACA ACTAGCTAAC AAATTATACA AAAACGCATT AATTTCACTA
GATAAAGCTC AAAAAATTAA TTCCAAGAAT CCTGAAACAT ACTTTGCTAA AAGTAATATT
TATCTTAAAA TTTCACAACT ACAAAATGCG AAAACTGCTT TAGAAACTGC ATTAAGGATT
GAATCAAACA ACTATAAAGC TATTTTTCAA TTAGGAAATA TTTTTTTAAT GGAAAAAAAT
TACTCAGAAG CCATCAAATT ATTTGATAAA TCTGTCAAGA TTAAACCTGA TTTCTGGCAA
GCAATCAATA ATCAAGGTTT AGCTTATTTC GAGAAAAACA ACATCAATCT ATCTATAAAA
CTTTTTGAAA AAGCAATCTC AATTGATGAC AATGCAGAGC CATTACTAGG ACTTGCTTCG
TGTTTAAGAA CAAAAGATAT TAAATTAGCT CTTCAAATAG CAAAAAGAGC TTTAAAGAAA
AATCCCAACT ATGTTAATTA TGATTATAGA AAAGAACAGT TGTGGGGAGA AAAATTGCAA
ACCTCAACGG AAATACTTTT AAAAAATGAT CAGCTTAAAA GAGATGTAAT ATTGGCAAAA
TCAAAAATAA ATACATCTTC TTAA
 
Protein sequence
MKKFLKNILC VSLISFYVLK IEKVQSIIPY YYFPTIKNLQ KESLGIGKNA YQLLYFGQYK 
ESLNLAKLAI KINPTDEKLW LIFSEAQLAN KLYKNALISL DKAQKINSKN PETYFAKSNI
YLKISQLQNA KTALETALRI ESNNYKAIFQ LGNIFLMEKN YSEAIKLFDK SVKIKPDFWQ
AINNQGLAYF EKNNINLSIK LFEKAISIDD NAEPLLGLAS CLRTKDIKLA LQIAKRALKK
NPNYVNYDYR KEQLWGEKLQ TSTEILLKND QLKRDVILAK SKINTSS