| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMN2A_0246 |
|---|
| Symbol | |
|---|
| ID | 3605617 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. NATL2A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007335 |
|---|
| Strand | + |
|---|
| Start bp | 791583 |
|---|
| End bp | 793334 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 637687103 |
|---|
| Product | alpha amylase domain-containing protein |
|---|
| Protein accession | YP_291441 |
|---|
| Protein GI | 72382086 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCTGAGT TGGATAGTGA ATTAGATGAG CTGAGATTAT CTCTCAGAGA AATTTATCCT
GGGCACTCTG AACAAGAAAT CAATTCAGTG TGGTCGCAAT TGTTGCAGAT TCTTGATCCA
TTTTGTGTTA ACAAGGGCAA AGATGAATTA GAGATCGAAT CAATTTGGGA TTCTTCAAGT
GTTGTTTTGA TTACTTACCC TGATTCAATT TATAGGAAGG ATGAATCAAC TTTAAAAACA
TTAACTGAAT TCGTAAAAAA TAGATTAGGT GGCCTTTCAT CAGTCATACA TGTTTTACCA
TTTCTTCCTT CTACAAGTGA TGGAGGATTC GCTGTTTCTA ATCATGAAAA AATCGATGAT
TCCTTTGGGA ATTGGAATGA TTTAAAGGAT TTATCTGGTA AGCATAAAAT AATGGCAGAT
CTAGTTTTAA ATCATGTCTC TTCTTCTCAT CCATGGGTTC ATCAATTTAT AAAATCAGAG
GATTCAGGTC CGTCTTACAT TGTTTCTCCT TCTGAGACTA ATGTTTGGGA AAATGTGATA
AGGCCCAGAA ATACATCACT CTTTACCAAT ATCAATACTA AACAAGGCTT TAAGAGTGTT
TGGACAACCT TTGGACCAGA TCAGATTGAT GTTGATTGGA GGAATCCAAA TATCTTTTTA
GAGTTTTTGA AATTATTGGT TAGATACATA ACTAATGGAG CTGACTGGAT TCGACTTGAT
GCAATTGCAT TTATTTGGAA GGAGCCGCAT ACTACTTGTT TACATTTAGA CCCAGTACAC
TCAATAGTTA AGCTGTTAAA TAAATGTTTG AAGATTATAA AACCTTCGGC AGTATTAATT
ACCGAGACTA ATGTTCCAGA GAAAGAAAAC CTTTCTTATT TGATTGAAGG AAATGAAGCT
AATCTTGCTT ATAACTTTAC TCTACCTCCT TTATTATTAG AAGCTATTTA TACCGGTAAA
ACAGATTTAT TGAAGAGTTG GTTGTCAACG TGGAAAGAGT TGCCAAGGCA CACTTCTTTG
CTCAACTTCA CTTCTTCACA CGATGGTATT GGATTACGAG CACTAGAAGG CATTATGGAC
GATCAGAGAA TACATAATCT CTTGGTTGAA TCAGAGAAAC GAGGAGGATT AGTTAGTCAT
CGTCGCTTGT CAAATGGAGA TGATCAACCT TATGAATTAA ACATTAGTTG GTGGAGTGCG
ATGTCAAACG AAGGCTCCGA TAATACGGTA TTTCAATTTG AGCGTTTTTT ATTAAGTCAG
CTTTTTACTT TATCCATAAA AGGTGTTCCA GCTTTTTATC TTCCATCTGT ATTAGCTTCT
CCGAATGATA TAGATTCTTT TAGGAAAACA GGGCAAAGAA GAGATTTAAA TCGAGAAAAA
TTTGAAGCTA ACCAATTACT TGATGTACTT AAGAACTTTG ATTCTCCCGC TAGTAAAAAT
ATTTCATACC TCACTCATAT AGTTAAAGTC AGGTCAAGAC TTAAAGCTTT TCATCCGGAG
GCGAGTATGA AATGTATCTC TACGAATATA GCTAATTGTA TAATTCTTCA AAGAGGCTTG
GATGAAGATA GTGTCTATGT TATTTGTAAT ATGTCTAGTA ATTTCTTATG TATTTCTCCA
TTAAATCAAA TTAATTCATT AGAATTAACC CCTGAGAAAC GTTTACTAGA TAATATTACA
GGTTCTTATT TCAATACTGA TACTTTTAAA CTTAATCCTT ATCAAGTCGT TTGGCTTACA
TTAGATGATT AG
|
|---|
| Protein sequence | MSELDSELDE LRLSLREIYP GHSEQEINSV WSQLLQILDP FCVNKGKDEL EIESIWDSSS
VVLITYPDSI YRKDESTLKT LTEFVKNRLG GLSSVIHVLP FLPSTSDGGF AVSNHEKIDD
SFGNWNDLKD LSGKHKIMAD LVLNHVSSSH PWVHQFIKSE DSGPSYIVSP SETNVWENVI
RPRNTSLFTN INTKQGFKSV WTTFGPDQID VDWRNPNIFL EFLKLLVRYI TNGADWIRLD
AIAFIWKEPH TTCLHLDPVH SIVKLLNKCL KIIKPSAVLI TETNVPEKEN LSYLIEGNEA
NLAYNFTLPP LLLEAIYTGK TDLLKSWLST WKELPRHTSL LNFTSSHDGI GLRALEGIMD
DQRIHNLLVE SEKRGGLVSH RRLSNGDDQP YELNISWWSA MSNEGSDNTV FQFERFLLSQ
LFTLSIKGVP AFYLPSVLAS PNDIDSFRKT GQRRDLNREK FEANQLLDVL KNFDSPASKN
ISYLTHIVKV RSRLKAFHPE ASMKCISTNI ANCIILQRGL DEDSVYVICN MSSNFLCISP
LNQINSLELT PEKRLLDNIT GSYFNTDTFK LNPYQVVWLT LDD
|
|---|
| |